PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P31260_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 343aa    MW: 37629.8 Da    PI: 9.7189
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P31260_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.17.2e-124899147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                           +++WT+eE+  l+ +v+++G g W+tI +          R+  ++k++w+++
  GSMUA_Achr6P31260_001 48 KQKWTAEEESALKAGVRKHGAGKWRTILKDPEfsgtlCLRSNVDLKDKWRNL 99
                           79*****************************99999966***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.32743104IPR017930Myb domain
SuperFamilySSF466891.64E-1545117IPR009057Homeodomain-like
SMARTSM007172.2E-747102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-134799IPR009057Homeodomain-like
PfamPF002499.3E-94899IPR001005SANT/Myb domain
CDDcd116604.64E-204999No hitNo description
SMARTSM005262.1E-13162227IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467858.16E-17162238IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150423.665164232IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.105.6E-15167234IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005385.6E-9169225IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MPINSGPNGV RVTQLSPPWP IPRPRPEDSV LSNAIIEDFG FLLMGAPKQK WTAEEESALK  60
AGVRKHGAGK WRTILKDPEF SGTLCLRSNV DLKDKWRNLS VTANGWGSRE KARIAMKRSQ  120
HIVKHDNSPK AVSTSIEDSD DEILDIKPIA VSSENIHVTG QKRSFSRIDN LILEAITNLK  180
EPTGSNKTTI AMYIEDQYWP PPDFTRLLSA KLKTLTASGR LIKVKRRYRI APTSAFLKGK  240
SSNISIYEGR QREPSGSVVD DFTPLLRSQV DVELARMRNM TAQEAAAAAA QAVAEAEAAM  300
AQAEEAAKEA EAAEADAEAA QAFAEAAMLT IKNRKTADLI VRA
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406711.10.0PREDICTED: single myb histone 6
RefseqXP_009406713.10.0PREDICTED: single myb histone 6
SwissprotC0HIA32e-90SMH6_MAIZE; Single myb histone 6
TrEMBLM0TBS10.0M0TBS1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P31260_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-82telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]