PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P30830_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 315aa    MW: 35300.9 Da    PI: 6.8232
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P30830_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-161462148
                           TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                           rg+W++eEd  l+ +++++G+g +W + ++++g++R++k+c++rw++yl
  GSMUA_Achr6P30830_001 14 RGPWSPEEDATLKAYIEKHGTGgNWIALPHKIGLKRCGKSCRLRWLNYL 62
                           89*********************************************97 PP
2Myb_DNA-binding38.23.4e-1270111346
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             ++ eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  GSMUA_Achr6P30830_001  70 GFSVEEDHIICSLYSSIGSR-WSIIAAQLP-GRTDNDIKNHWNT 111
                            6899****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.095962IPR017930Myb domain
SuperFamilySSF466892.47E-2712109IPR009057Homeodomain-like
SMARTSM007176.6E-131364IPR001005SANT/Myb domain
PfamPF002492.0E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-241569IPR009057Homeodomain-like
CDDcd001676.33E-101662No hitNo description
PROSITE profilePS5129422.23663117IPR017930Myb domain
SMARTSM007171.5E-967115IPR001005SANT/Myb domain
PfamPF002499.0E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGRAPCCDKA TVKRGPWSPE EDATLKAYIE KHGTGGNWIA LPHKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSVEEDHIIC SLYSSIGSRW SIIAAQLPGR TDNDIKNHWN TRLKKKLLGK  120
PREPPQPRCL SVNQVSTEVA NAMSLQTHPQ TLSAPALERM QLRGCEDPFF YHHPLGDKLF  180
EDQHTDTSTS TTPIDSSHRR LLQVKQEIQI LLNQTVQENM DCSVPGCPPS DAGGLAESSF  240
SDCNSLVAGL SDLHEIFHGK EPFLGLQEAN QSTESDCFKE MYREKERDGM SLWSSMASSL  300
HPDSVLQEYL LGYDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-24141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406664.10.0PREDICTED: transcription factor MYB36-like
SwissprotQ9FKL22e-81MYB36_ARATH; Transcription factor MYB36
TrEMBLM0TBM80.0M0TBM8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P30830_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-83myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]