PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P30050_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 285aa MW: 31594.8 Da PI: 7.657 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.7 | 2.2e-53 | 9 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrF+P+d+el+++yL++kv g++++ ++ +vd++k+ePwdLp +++ + kewyfFs rd+kyatg+r+nrat sgyWkatgk GSMUA_Achr6P30050_001 9 LPPGFRFQPRDDELICDYLAAKVGGRSFHGRPAMVDVDLNKCEPWDLPDTASVGGKEWYFFSLRDRKYATGQRTNRATMSGYWKATGK 96 79****************************889***************8888899********************************* PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d++v++ kg lvg++ktLvfy+grapkg+ktdWvmheyr+ GSMUA_Achr6P30050_001 97 DRSVTR-KGLLVGTRKTLVFYQGRAPKGRKTDWVMHEYRM 135 *****9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.63E-61 | 3 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.444 | 9 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-26 | 10 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MLSMVEAKLP PGFRFQPRDD ELICDYLAAK VGGRSFHGRP AMVDVDLNKC EPWDLPDTAS 60 VGGKEWYFFS LRDRKYATGQ RTNRATMSGY WKATGKDRSV TRKGLLVGTR KTLVFYQGRA 120 PKGRKTDWVM HEYRMEGSAA TPTFPFKEDW VLCRVCCKSR GISTDASMET SLDDSSPQSL 180 PVVMGNHISS GQTPVNLEGS EQVTCFSNTT QSHTSQCPNL DPWLPAMERG IPLTRCLPSL 240 NPVLYQRTKL EGDPEGEVVP SLAEGSLDGC LSQSGLPSTR NPFLD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-49 | 4 | 158 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-49 | 4 | 158 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-49 | 4 | 158 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-49 | 4 | 158 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-49 | 4 | 158 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 9e-49 | 4 | 158 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 9e-49 | 4 | 158 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 9e-49 | 4 | 158 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 9e-49 | 4 | 158 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 9e-49 | 4 | 158 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 9e-49 | 4 | 158 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 9e-49 | 4 | 158 | 15 | 168 | NAC domain-containing protein 19 |
3ulx_A | 9e-49 | 5 | 159 | 11 | 169 | Stress-induced transcription factor NAC1 |
4dul_A | 8e-49 | 4 | 158 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 8e-49 | 4 | 158 | 12 | 165 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009406578.2 | 0.0 | PREDICTED: NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 1e-86 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | M0TBF0 | 0.0 | M0TBF0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P30050_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 6e-89 | NAC domain containing protein 1 |