PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P30050_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 285aa    MW: 31594.8 Da    PI: 7.657
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P30050_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.72.2e-5391351128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrF+P+d+el+++yL++kv g++++   ++ +vd++k+ePwdLp +++ + kewyfFs rd+kyatg+r+nrat sgyWkatgk
  GSMUA_Achr6P30050_001   9 LPPGFRFQPRDDELICDYLAAKVGGRSFHGRPAMVDVDLNKCEPWDLPDTASVGGKEWYFFSLRDRKYATGQRTNRATMSGYWKATGK 96 
                            79****************************889***************8888899********************************* PP

                    NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            d++v++ kg lvg++ktLvfy+grapkg+ktdWvmheyr+
  GSMUA_Achr6P30050_001  97 DRSVTR-KGLLVGTRKTLVFYQGRAPKGRKTDWVMHEYRM 135
                            *****9.999****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-613158IPR003441NAC domain
PROSITE profilePS5100555.4449158IPR003441NAC domain
PfamPF023651.6E-2610135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MLSMVEAKLP PGFRFQPRDD ELICDYLAAK VGGRSFHGRP AMVDVDLNKC EPWDLPDTAS  60
VGGKEWYFFS LRDRKYATGQ RTNRATMSGY WKATGKDRSV TRKGLLVGTR KTLVFYQGRA  120
PKGRKTDWVM HEYRMEGSAA TPTFPFKEDW VLCRVCCKSR GISTDASMET SLDDSSPQSL  180
PVVMGNHISS GQTPVNLEGS EQVTCFSNTT QSHTSQCPNL DPWLPAMERG IPLTRCLPSL  240
NPVLYQRTKL EGDPEGEVVP SLAEGSLDGC LSQSGLPSTR NPFLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-49415812165NO APICAL MERISTEM PROTEIN
1ut4_B8e-49415812165NO APICAL MERISTEM PROTEIN
1ut7_A8e-49415812165NO APICAL MERISTEM PROTEIN
1ut7_B8e-49415812165NO APICAL MERISTEM PROTEIN
3swm_A9e-49415815168NAC domain-containing protein 19
3swm_B9e-49415815168NAC domain-containing protein 19
3swm_C9e-49415815168NAC domain-containing protein 19
3swm_D9e-49415815168NAC domain-containing protein 19
3swp_A9e-49415815168NAC domain-containing protein 19
3swp_B9e-49415815168NAC domain-containing protein 19
3swp_C9e-49415815168NAC domain-containing protein 19
3swp_D9e-49415815168NAC domain-containing protein 19
3ulx_A9e-49515911169Stress-induced transcription factor NAC1
4dul_A8e-49415812165NAC domain-containing protein 19
4dul_B8e-49415812165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406578.20.0PREDICTED: NAC domain-containing protein 21/22-like
SwissprotQ84TE61e-86NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLM0TBF00.0M0TBF0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P30050_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.26e-89NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]