PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P30000_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 193aa    MW: 21787 Da    PI: 10.4769
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P30000_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.72e-11556147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                           +++WT+eE+  l  +v ++G g W+tI +          R+  ++k++w+++
  GSMUA_Achr6P30000_001  5 KQKWTAEEESALRAGVLKHGAGKWRTILKDPEfssilCLRSNVDLKDKWRNL 56
                           79***********************************66***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.383161IPR017930Myb domain
SuperFamilySSF466899.66E-16277IPR009057Homeodomain-like
SMARTSM007176.3E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-13456IPR009057Homeodomain-like
PfamPF002492.4E-8556IPR001005SANT/Myb domain
CDDcd116601.73E-18656No hitNo description
SMARTSM005264.8E-12119184IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.2E-13119181IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150418.055121193IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.8E-13123181IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.0E-8126181IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MGAPKQKWTA EEESALRAGV LKHGAGKWRT ILKDPEFSSI LCLRSNVDLK DKWRNLSVTA  60
NGWGSREKAR LALKRSRQNS NHDYNPKAFN RVTEDIDAQI LDAKPLAVTS ENLHVTGQKR  120
SFSRLDNLIL EAITNLKEPT GSNKTTISMY IEDQYWPPSD FTPLLSAKLK ALTASGRLIK  180
VVVFLSLFKF IHH
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406570.11e-132PREDICTED: single myb histone 6-like isoform X2
RefseqXP_009406571.11e-132PREDICTED: single myb histone 6-like isoform X2
SwissprotC0HIA39e-75SMH6_MAIZE; Single myb histone 6
TrEMBLM0TBE51e-140M0TBE5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P30000_0011e-141(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.34e-62telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]