PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P29070_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 697aa    MW: 78201.1 Da    PI: 5.3671
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P29070_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.73.8e-22142242198
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f+k+lt sd++++g +++ +++a+e+       ++++   ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD++ 
  GSMUA_Achr6P29070_001 142 FCKTLTASDTSTHGGFSVLRRHADEClpsldmsQNPPW--QELVAKDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDVFN 227
                            99****************************97444444..48********************************************** PP

                            EEE-SSSEE..EEEEE- CS
                     B3  82 Fkldgrsefelvvkvfr 98 
                            F   + ++ el+v+v+r
  GSMUA_Achr6P29070_001 228 FL--RGENDELRVGVRR 242
                            **..3478889***997 PP
2Auxin_resp1027.6e-34268348183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            a+ha++t++ F+v+Y+Pr+s+s+F+++v+k+++a + k+svGmRf m+fe+++++e+r+sGt+vgv +  +++W +S+Wr Lk
  GSMUA_Achr6P29070_001 268 ASHAIATGTLFSVFYKPRTSRSDFIISVNKYLEAKNYKFSVGMRFNMRFEGDEAPEKRFSGTIVGVDT--TSQWAGSEWRTLK 348
                            789****************************************************************9..568*******996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.42E-42131271IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-39138257IPR015300DNA-binding pseudobarrel domain
CDDcd100172.58E-19140242No hitNo description
PROSITE profilePS5086310.941142244IPR003340B3 DNA binding domain
SMARTSM010194.1E-21142244IPR003340B3 DNA binding domain
PfamPF023622.6E-20142242IPR003340B3 DNA binding domain
PfamPF065079.0E-32268348IPR010525Auxin response factor
PfamPF023094.3E-6545606IPR033389AUX/IAA domain
PROSITE profilePS5174525.165570663IPR000270PB1 domain
SuperFamilySSF542771.5E-11573648No hitNo description
PfamPF023092.1E-6617661IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MLSYHYYKLF LTTGGNFLYL GSYGDVLYQE LWKACAGSLV TLPREKERVY YFPQGHMEQL  60
EASTNQELDQ QMPLFDLPSK ILCRVVHVEL RAEPDTDEVY AQITLQPEVN VKPSYSLLCT  120
QDEVTSPDSP LAEPERCNVR SFCKTLTASD TSTHGGFSVL RRHADECLPS LDMSQNPPWQ  180
ELVAKDLHGN EWHFRHIFRG QPRRHLLTTG WSVFVSSKKL VAGDVFNFLR GENDELRVGV  240
RRLMRQPNNM PSSVISSHSM HLGVLATASH AIATGTLFSV FYKPRTSRSD FIISVNKYLE  300
AKNYKFSVGM RFNMRFEGDE APEKRFSGTI VGVDTTSQWA GSEWRTLKVQ WDEPSCIRRP  360
DTVSPWELEP LLAAAPPTFQ PVQRNKRTRP SAAPAESSDL TPAFGLWKST AESTQNFSFS  420
GLQGGKELCA PSCPTSVFPS ASKPESIEFN GNNGPSAING AMYWPFRTEP QTDSLMADIN  480
KEQSEKKQET STGCWLFGIQ LVESSAVGEL SPLTTNSCVG EEQAVTSLDV ESDQQSQPSN  540
INRSDALAVS SEPEKSCLRS TQECQSRQLR SCTKVHMQGM AVGRAVDLTR FYGYDELLQK  600
LEEMFNIEGE LYGAAKKWEV IYTDDEDDIM MVGDDPWHEF CSMVRKIYIY TCEEAKRLTP  660
RVKLPAVGKV IRPLPKKASC DADATENSSK DQALVAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.02137113355Auxin response factor 1
4ldw_A0.02137113355Auxin response factor 1
4ldw_B0.02137113355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14247PREKER
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018682443.10.0PREDICTED: auxin response factor 7-like
RefseqXP_018682444.10.0PREDICTED: auxin response factor 7-like
RefseqXP_018682445.10.0PREDICTED: auxin response factor 7-like
SwissprotQ6YVY00.0ARFG_ORYSJ; Auxin response factor 7
TrEMBLM0TB520.0M0TB52_MUSAM; Auxin response factor
STRINGGSMUA_Achr6P29070_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.20.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]