PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P28890_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 319aa MW: 35723.7 Da PI: 7.269

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P28890_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.8	9e-53	13	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWka 85 +ppGfrFhPtdeel+ +yLkkkv+ +k+el evi+evd+++vePwdL++ ++ + ++ewyfFs++d+ky+tg+r+nrat +g+Wka GSMUA_Achr6P28890_001 13 VPPGFRFHPTDEELLLYYLKKKVSFEKFEL-EVIREVDLNNVEPWDLQErcRIGSaPQDEWYFFSHKDRKYPTGSRTNRATGAGFWKA 99 69**************************.99**********963433332445************************* PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+dk + + + e +g++ktLvfy+grap+g+ktdW+mheyrl GSMUA_Achr6P28890_001 100 TGRDKCIRN-SYERIGMRKTLVFYRGRAPHGQKTDWIMHEYRL 141 ****9.8899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-59	8	167	IPR003441	NAC domain
PROSITE profile	PS51005	57.874	13	167	IPR003441	NAC domain
Pfam	PF02365	1.2E-27	14	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MASAASSSSS TGVPPGFRFH PTDEELLLYY LKKKVSFEKF ELEVIREVDL NNVEPWDLQE 60 RCRIGSAPQD EWYFFSHKDR KYPTGSRTNR ATGAGFWKAT GRDKCIRNSY ERIGMRKTLV 120 FYRGRAPHGQ KTDWIMHEYR LDDSDDARGE AGGGSDDGWV VCRVFKKKCF FKGSGEGSTS 180 QAMENHMSVA ASHDQSPSLS SNYIHPNLGH HHRHLHHHNG LYYSQMPTGP YSHGQVQDLM 240 TNHRPSGYDF GVLPGDSAPV VKPYDGALAA AAACVGMQSE RDPGPNEWAV LDGITAQQQQ 300 MNQMASQRGG EMDLWGYGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-52	9	168	13	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-52	9	168	13	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-52	9	168	13	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-52	9	168	13	166	NO APICAL MERISTEM PROTEIN
4dul_A	2e-52	9	168	13	166	NAC domain-containing protein 19
4dul_B	2e-52	9	168	13	166	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009406461.1	0.0	PREDICTED: protein BEARSKIN1-like
Refseq	XP_018682448.1	0.0	PREDICTED: protein BEARSKIN1-like
Refseq	XP_018682449.1	0.0	PREDICTED: protein BEARSKIN1-like
Refseq	XP_018682450.1	0.0	PREDICTED: protein BEARSKIN1-like
Refseq	XP_018682451.1	0.0	PREDICTED: protein BEARSKIN1-like
Refseq	XP_018682452.1	0.0	PREDICTED: protein BEARSKIN1-like
Swissprot	Q9SV87	1e-101	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	M0TB34	0.0	M0TB34_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P28890_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9297	30	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	2e-85	NAC domain containing protein 70

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]