PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr6P28760_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 136aa MW: 14927 Da PI: 9.6578 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.7 | 0.00024 | 39 | 74 | 14 | 54 |
HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 d+i ++ ++L++l+ + +K + a++L +A+ YIk L GSMUA_Achr6P28760_001 39 DKIGERVSKLQQLVSPF-----GKSDTASVLSEATAYIKFL 74 57778888999999998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.369 | 25 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-10 | 26 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-7 | 35 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.42E-5 | 36 | 79 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 136 aa Download sequence Send to blast |
MMMTEVVDHK RRGHDGFVLG NLSGEKRLKA AIGVQEKKDK IGERVSKLQQ LVSPFGKSDT 60 ASVLSEATAY IKFLHDQLQV LSAPYLQTTV TGEMEDGEHH SLRSRGLCLV PVASTRRIAQ 120 SNGADLWAPV NSNRSP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009406443.1 | 2e-95 | PREDICTED: transcription factor bHLH113-like | ||||
Swissprot | Q7XJU2 | 7e-43 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | M0TB21 | 1e-96 | M0TB21_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P28760_001 | 2e-97 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5272 | 8 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G05710.5 | 3e-45 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|