PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P28700_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Nin-like
Protein Properties Length: 920aa    MW: 102374 Da    PI: 6.9508
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P28700_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.43.2e-29649700152
                 RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                            aek+i++++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++
  GSMUA_Achr6P28700_001 649 AEKNINFSVLQRYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 700
                            589***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF557815.49E-5213292IPR029016GAF domain-like
PROSITE profilePS5151917.302635720IPR003035RWP-RK domain
PfamPF020421.9E-25652700IPR003035RWP-RK domain
SuperFamilySSF542771.31E-21813907No hitNo description
Gene3DG3DSA:3.10.20.2405.1E-21823904No hitNo description
PROSITE profilePS5174522.1823905IPR000270PB1 domain
SMARTSM006669.6E-21823905IPR000270PB1 domain
PfamPF005641.2E-16824904IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 920 aa     Download sequence    Send to blast
MDDFTPTNYG ASGSPSQDDP FSLAELMNFD GFAESCSPTM VDQISNLSFI AAYQIPGFSS  60
SLAPLSVSAE GTDSVPGDNR VSTGNYYNCI EKTALQRAGS QMGLPSTSSR TNITSRSASY  120
SAFDGLSDDA ILTIPRPFEG VSLPERMLKA LSLLKESSCS GILAQVWRPI KQGDQYILST  180
SEQPFLLDEI LAGYREVSRQ FTFSAKEAPG LFTGLPGRVY ISGMPEWTSN VIYYRKFEYL  240
RVDYAISHEV RGSLAVPVFD PYEGSCLAVL ELVTTRERPN FDAEMETVCN ALQAVNLKTT  300
KVQVHHQNLT KSQISAFSEI LDVLRTVCHA HMLPLALTWV PVWYDDGGVN DLSNDNIGGM  360
KPTSRRLALR IQESACYVND MQMQDFLHAC AEHRLEKGQG IAGKALQSNH PFFSPDVKVY  420
DIREYPLAHH ARKFDLRAAV AIRLRSTYTG NDDYILEFFL PVNCGGNIEQ QLLLNSLSNT  480
MQRICRSLRT VSDAAAAGAE ITRIGNHKGA DVGALSTNFS MTCSQLSDYD NETATEMHLG  540
TQEIGSNEQN GDAHLEQYIE GLKHVKAYRY MIWHLTDLAC KVLMTPVNNI ICGSMVLQFG  600
YRIHFGLHSK WYGFGKSHCT NMCEFFLRLR IHGLSSSSIK QMEKKRSTAE KNINFSVLQR  660
YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLQKIQNV INSVQGVEGA  720
LKQNSLLVRW CQISISLADT KEGPHTDPNV KQMNLASLEC QVTSRSSSLE ELDKMMMKAE  780
ADDGIMEHSH RSSSGMTDSS SGSASSHPSF KRSKMLISQN GPSVTVKATY KDDTVRFKFM  840
PSMGIHNLFE EIGKRFKLLV GTFQLKYRDD EEEWVMLEND SDLQECVDVL ENIGLQKMKL  900
QVRDIPCNVG SSASSNCLKP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018683319.10.0PREDICTED: protein NLP2-like
SwissprotQ0JC271e-165NLP2_ORYSJ; Protein NLP2
TrEMBLM0TB150.0M0TB15_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P28700_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36703573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43500.21e-142Nin-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]