PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P27750_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HSF

Protein Properties

Length: 393aa MW: 43982.1 Da PI: 4.8861

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P27750_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	110.7	1.1e-34	12	102	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 Fl k+y++++d+++++++sws+++ sfvv+++ +fa ++Lp+yFkh+nf+SF+RQLn+YgF+k+++e+ weF+++ F kg GSMUA_Achr6P27750_001 12 FLLKTYDMVDDASTDDIVSWSSTNASFVVWNPPDFAARLLPTYFKHNNFSSFIRQLNTYGFRKIDSER---------WEFANEDFVKG 90 9**************************************************************999.........******* PP XXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkk 101 +k+ll +i+r+k GSMUA_Achr6P27750_001 91 QKRLLANIRRRK 102 ********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	8.3E-37	8	101	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.5E-57	8	101	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	5.99E-33	8	101	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	2.0E-19	12	35	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.3E-30	12	101	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.0E-19	50	62	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	51	75	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.0E-19	63	75	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MDGGGGGGPA RFLLKTYDMV DDASTDDIVS WSSTNASFVV WNPPDFAARL LPTYFKHNNF 60 SSFIRQLNTY GFRKIDSERW EFANEDFVKG QKRLLANIRR RKPIHSHSHP PGGGLADSER 120 AVLEEEIDRL NKEKAGLKDS LLKFEQQQSG TEIQIEDLKR RLADMEQRQL KMVAFVQRAL 180 QNPQLMENLV KMAAASSVDF SYIHKKRRLP LDVDYCQETS ENSFCDDHSS TTKPENGRML 240 DLDFCDKLKL ELCSAIPDDN LVMVRTQSSN EDNGSSQPKQ TGCGQEPMEC PPLVHETLQL 300 FGNDRSTIGD SADAKAVSSW EASPTCNEAP AIPTGGVNDV FWQQFLTERP GSSDTKEASS 360 CLRPNPCNEQ GEETMEGSRN GGISKKDMEQ LKL

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MDGGGGGGPA RFLLKTYDMV DDASTDDIVS WSSTNASFVV WNPPDFAARL LPTYFKHNNF  60
SSFIRQLNTY GFRKIDSERW EFANEDFVKG QKRLLANIRR RKPIHSHSHP PGGGLADSER  120
AVLEEEIDRL NKEKAGLKDS LLKFEQQQSG TEIQIEDLKR RLADMEQRQL KMVAFVQRAL  180
QNPQLMENLV KMAAASSVDF SYIHKKRRLP LDVDYCQETS ENSFCDDHSS TTKPENGRML  240
DLDFCDKLKL ELCSAIPDDN LVMVRTQSSN EDNGSSQPKQ TGCGQEPMEC PPLVHETLQL  300
FGNDRSTIGD SADAKAVSSW EASPTCNEAP AIPTGGVNDV FWQQFLTERP GSSDTKEASS  360
CLRPNPCNEQ GEETMEGSRN GGISKKDMEQ LKL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-21	3	101	17	129	Heat shock factor protein 1
5d5v_B	2e-21	3	101	17	129	Heat shock factor protein 1
5d5v_D	2e-21	3	101	17	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009406338.1	0.0	PREDICTED: heat stress transcription factor A-5-like
Swissprot	Q6K6S5	1e-121	HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBL	M0TAS0	0.0	M0TAS0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P27750_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9000	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	3e-92	HSF family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]