PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P27420_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TCP
Protein Properties Length: 299aa    MW: 33141.9 Da    PI: 7.6901
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P27420_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP936.1e-2946149389
                    TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ss 67 
                            g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LGf ++sk ++WLl +a+++i++l+ +                       + 
  GSMUA_Achr6P27420_001  46 GGKDRHSKVTTIRGLRDRRVRLSVPTAIQLYDLQDKLGFNQPSKVVDWLLSAAQHEIDKLPPLemlpgnlfrfpqpvanshvtgsaQ- 132
                            78*************************************************************888888887743333222221110. PP

                    TCP  68 ssaseceaesssssasnsssg...........k 89 
                                         s+     +           +
  GSMUA_Achr6P27420_001 133 -----------AYSG-----NavgdddeythrD 149
                            ...........1111.....1122222222221 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.09247105IPR017887Transcription factor TCP subgroup
PfamPF036341.4E-2847147IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MIRSSREEGE FTGQDVGTSE SKAQPSLRSW TAHNNPRIVR VSRTFGGKDR HSKVTTIRGL  60
RDRRVRLSVP TAIQLYDLQD KLGFNQPSKV VDWLLSAAQH EIDKLPPLEM LPGNLFRFPQ  120
PVANSHVTGS AQAYSGNAVG DDDEYTHRDK AQRLASSSSL ATEDIFNSNV AEGTSMMPKA  180
VNLDVLPRSK EKEALKDHGV VLGNSAITYN PYYHLETPNA YSYDHSEVPH GHHPVAILAS  240
YMAAASKVET QQYSHLQMAS SESSANALRT SLHAAIPNLM VLHKRNTASE HHHQDHHQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1952106155Putative transcription factor PCF6
5zkt_B3e-1952106155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00008PBMTransfer from 496250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406310.10.0PREDICTED: transcription factor TCP5-like
RefseqXP_018682833.10.0PREDICTED: transcription factor TCP5-like
RefseqXP_018682834.10.0PREDICTED: transcription factor TCP5-like
RefseqXP_018682835.10.0PREDICTED: transcription factor TCP5-like
RefseqXP_018682836.10.0PREDICTED: transcription factor TCP5-like
RefseqXP_018682837.10.0PREDICTED: transcription factor TCP5-like
TrEMBLM0TAN70.0M0TAN7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P27420_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.19e-43plastid transcription factor 1