PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P27090_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 300aa    MW: 33745.1 Da    PI: 6.7583
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P27090_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.3e-32176233259
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            +Dgy+WrKYGqK vk+s +prsYYrCt ++C vkk+vers++dp+vv++tYeg+H+h+
  GSMUA_Achr6P27090_001 176 EDGYRWRKYGQKAVKNSAYPRSYYRCTAQSCDVKKRVERSHQDPTVVITTYEGHHTHH 233
                            8********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.6E-34160235IPR003657WRKY domain
SuperFamilySSF1182902.48E-28167235IPR003657WRKY domain
PROSITE profilePS5081130.354170235IPR003657WRKY domain
SMARTSM007742.7E-36175234IPR003657WRKY domain
PfamPF031062.9E-25176233IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MSGERTEPYL HGHYDDLFSI FSQKPGGGRA DGLQGFDHQM ASHVLSPSDR LHGSPMDYLL  60
LARGFDFSSS QPDDLVVGSR RSKTAPAGGS DGKTLVTPNF STSSSSTELV GEEDSGPRKT  120
DQRKQEEEEE EKQAEGGEEG PDEFKKANNP RRKKGEKRER EPRFAFMTRS EVDHLEDGYR  180
WRKYGQKAVK NSAYPRSYYR CTAQSCDVKK RVERSHQDPT VVITTYEGHH THHSPVNVWG  240
STYSSSPSPA MPMDLRHDLL LQQAFPAGYT NPNMHLPRPP TPDYGLLQDI VTSFDHSSQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-25165235777Probable WRKY transcription factor 4
2lex_A6e-25165235777Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406269.10.0PREDICTED: probable WRKY transcription factor 71
TrEMBLM0TAK40.0M0TAK4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P27090_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.12e-41WRKY DNA-binding protein 71