PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr6P27090_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 300aa MW: 33745.1 Da PI: 6.7583 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.1 | 3.3e-32 | 176 | 233 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s +prsYYrCt ++C vkk+vers++dp+vv++tYeg+H+h+ GSMUA_Achr6P27090_001 176 EDGYRWRKYGQKAVKNSAYPRSYYRCTAQSCDVKKRVERSHQDPTVVITTYEGHHTHH 233 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.6E-34 | 160 | 235 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-28 | 167 | 235 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.354 | 170 | 235 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-36 | 175 | 234 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.9E-25 | 176 | 233 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 300 aa Download sequence Send to blast |
MSGERTEPYL HGHYDDLFSI FSQKPGGGRA DGLQGFDHQM ASHVLSPSDR LHGSPMDYLL 60 LARGFDFSSS QPDDLVVGSR RSKTAPAGGS DGKTLVTPNF STSSSSTELV GEEDSGPRKT 120 DQRKQEEEEE EKQAEGGEEG PDEFKKANNP RRKKGEKRER EPRFAFMTRS EVDHLEDGYR 180 WRKYGQKAVK NSAYPRSYYR CTAQSCDVKK RVERSHQDPT VVITTYEGHH THHSPVNVWG 240 STYSSSPSPA MPMDLRHDLL LQQAFPAGYT NPNMHLPRPP TPDYGLLQDI VTSFDHSSQR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-25 | 165 | 235 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 6e-25 | 165 | 235 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009406269.1 | 0.0 | PREDICTED: probable WRKY transcription factor 71 | ||||
TrEMBL | M0TAK4 | 0.0 | M0TAK4_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P27090_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP623 | 37 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G29860.1 | 2e-41 | WRKY DNA-binding protein 71 |