PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P27000_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 283aa MW: 31283.2 Da PI: 8.7976

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P27000_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	106.7	2.9e-33	40	180	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk. 79 lp+G++F+Ptd+el+ e+L+ k+ +++++l+ +i+ +i++++P++Lp +v+++ +fF++ +k+y+tg+rk+r+++ GSMUA_Achr6P27000_001 40 LPAGVKFDPTDQELL-EHLEGKTGSDPHKLHPlidefipTIEGDdGICYTHPEKLP-RVRQDGLVRHFFHRPSKAYTTGTRKRRKVHt 125 799**********.99**9995443233343333555545******.777777788**************7444 PP NAM 80 .....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v + +g+l+g kk+Lv+y g+++k+ekt+W+mh+y+l GSMUA_Achr6P27000_001 126 darggETRWHKTGKTRPVSV-GGKLKGYKKILVLYtnYGKQRKPEKTSWIMHQYHL 180 45555778*******9.9*********6657999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.62E-37	31	199	IPR003441	NAC domain
PROSITE profile	PS51005	32.812	40	199	IPR003441	NAC domain
Pfam	PF02365	6.6E-15	41	180	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MVLITKKSHD IMIKTCPSCG HRIQYEQQQA SSSIQDLPGL PAGVKFDPTD QELLEHLEGK 60 TGSDPHKLHP LIDEFIPTIE GDDGICYTHP EKLPRVRQDG LVRHFFHRPS KAYTTGTRKR 120 RKVHTDARGG ETRWHKTGKT RPVSVGGKLK GYKKILVLYT NYGKQRKPEK TSWIMHQYHL 180 GSDEEEKDGE LVVSKVFYQT QPRQCGSGAK DSYGRNVKAA VDDDDDDGAA TAAAVVVLGE 240 GSAVGDYYAP SLIGYNQGGQ NRVSSPHLLP NFAMHTGGAS FLS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009406259.1	0.0	PREDICTED: NAC domain-containing protein 73 isoform X2
Swissprot	O49459	1e-111	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	M0TAJ5	0.0	M0TAJ5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P27000_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3075	37	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-113	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]