PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P26840_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | Trihelix | ||||||||
Protein Properties | Length: 260aa MW: 29140.9 Da PI: 9.7621 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 46.3 | 1.1e-14 | 22 | 111 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf....erspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 +W++ e+ +L++a ++ +l+rg+l++++W+ev++++ r++ f r+ +qCk++++ l+k+yk +k++ + s++++f GSMUA_Achr6P26840_001 22 CWSEGETSTLVDAWGDRYLELKRGNLRQKHWQEVADAVncRRGAFgrrpPRTDVQCKNRIDTLKKKYKIEKARVTS---AFASQWQFF 106 7***********************************999866666322256779*****************99997...57789**** PP trihelix 83 dqlea 87 ++l+a GSMUA_Achr6P26840_001 107 SRLDA 111 **985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 7.7E-27 | 20 | 112 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MEGRETPPTR PPNPALPYRE DCWSEGETST LVDAWGDRYL ELKRGNLRQK HWQEVADAVN 60 CRRGAFGRRP PRTDVQCKNR IDTLKKKYKI EKARVTSAFA SQWQFFSRLD ALIGSAAAPP 120 AKKPSPSPPL ARRGAAISIS VDDSIFQRAA AAAAAAGDDN DEEDDLESPS GSSSRSGGGL 180 RMARGKEGDG IRELAKAIER FAEIYERVEG AKQRQMMEME KKRMEFAKEL EFQRMQIFVD 240 SQVQLAKIKR AKRSDADGYM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009406235.1 | 1e-147 | PREDICTED: trihelix transcription factor ASIL2-like | ||||
Swissprot | Q9LJG8 | 1e-36 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | M0TAH9 | 0.0 | M0TAH9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P26840_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2065 | 32 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58630.1 | 9e-40 | sequence-specific DNA binding transcription factors |