PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P26760_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family CPP
Protein Properties Length: 557aa    MW: 60618.6 Da    PI: 8.0173
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P26760_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.61.2e-13103142242
                    TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                            +kk+CnCk+skClk+YCeCfa+g++C+  C+C++C+N+ e+
  GSMUA_Achr6P26760_001 103 RKKNCNCKHSKCLKLYCECFASGVYCDG-CNCTNCCNNVEN 142
                            589*************************.********9875 PP
2TCR512.8e-16187226140
                    TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                            k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC dCkN e
  GSMUA_Achr6P26760_001 187 KHNKGCHCKKSGCLKKYCECFQANILCSDNCKCMDCKNFE 226
                            589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.5E-12102142IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.017103227IPR005172CRC domain
PfamPF036389.8E-10104139IPR005172CRC domain
SMARTSM011145.0E-20187228IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.0E-13190225IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MEQSVQPVSS ASSDFPPRKL VRHLDFTAVA YGGVSPSNAL SIALDSPQQL QPPPRATPAS  60
LSLSRPSIPS ITAGLIVNLF SKPESPKSRP RLLSDAKDGT PARKKNCNCK HSKCLKLYCE  120
CFASGVYCDG CNCTNCCNNV ENEAARHEAV EATLERNPNA FRPKIGSSPH ASRVTRDEAG  180
ELPLVGKHNK GCHCKKSGCL KKYCECFQAN ILCSDNCKCM DCKNFEGSEE RKALFRGDHG  240
STLYMQQTAS ATVNGAIGPS GFMSPSPSKK RKNQELLFGA LVKEPIKRLA QLPQAKTSAP  300
SSFSASVPAA SAINTAPVVS TKVTYRSLLA DIVQPEHIRD LCKLLAVVSG KVAKTFADRK  360
AQKLTEKEGQ SERSPIQSND DIDQTWHDLD MKKAPADEFS SEIPVEKANT EESGSDCRDG  420
QKGGRPTSPG TLALLCDEQD TIFMPSQATD TVSKSFSNQS ITEVYVEQER CVLMEFRDYL  480
LKLVTYGQMK EEKYSSRSAE HEKPCHLESA INGVATTVVP VAMETPQIAA YSSKYYRVGQ  540
QNIGNGDIKP NTEKSEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-2910423511131Protein lin-54 homolog
5fd3_B2e-2910423511131Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4840283e-38AM484028.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X101832.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009406227.10.0PREDICTED: protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-150TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLM0TAH10.0M0TAH1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P26760_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-135Tesmin/TSO1-like CXC domain-containing protein