PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P24610_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 601aa    MW: 68915.9 Da    PI: 4.3003
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P24610_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-07315363247
                            SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                            ++WT+eE++l+ + v   +       W++ ++ ++  R+ k+++s+++++
  GSMUA_Achr6P24610_001 315 QKWTEEEEQLFHEIVLSNPASlgknFWDKLPQVFP-ARSSKELVSYYFNV 363
                            79*************6554445555**********.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.9E-5312372IPR009057Homeodomain-like
SuperFamilySSF466895.69E-5314364IPR009057Homeodomain-like
PfamPF002494.5E-6315363IPR001005SANT/Myb domain
PROSITE profilePS500906.26316364IPR017877Myb-like domain
CDDcd001672.38E-7316364No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MVFNQNGQPF SGHMSDQFAY EHERHLAYDD QLSPFAEDSA CEAIPSKSQS SDEEQKGFSN  60
CHKDFENVTA DPPYDNLRSD LNGNPSFSWM VVNNSEVIWS ENGKRLFCDD ETCLYARKHS  120
KQLGSFEDNR FLAFEKPPLA AAAAEDFKDT RISVAVDAIN QATTSHCVAQ GNSREAGLDT  180
AREPSHHSYM GNIHQAVEFD QVEEICSPVF DYFKRKHVAI GVNHQVDIPE WRSNNHIGDY  240
EDFASTLPSK TTPPSSNHVV DEVESDRWDC GCADEGSIRC VRQHVMETRE KLKKQLGQDK  300
FIELGFGDMG EVVAQKWTEE EEQLFHEIVL SNPASLGKNF WDKLPQVFPA RSSKELVSYY  360
FNVFMLQKRA KQNRLDPLHV DSDDDEWQES HHGEFAMGED EDSVVESPLE DEDEDEDEDD  420
DDAGEEDETE EEEISETADD IENCDFYALA RNNEKGTCGA EQDIQDDSCT SFEGHYIGSD  480
SCDPLGIFDL QHDDGFYDGH CDPKAWDMSY SCGAEKDDFL STNNLIEECA NEMEEEEEKR  540
SHLFPSNRLR CFDQIESETK KRRRLPLVRV IDPLELHHEL IHKRRGRRRK EKWYKKNGDH  600
S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1560564KRRRL
2583590RRGRRRKE
3586591RRRKEK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018683535.10.0PREDICTED: uncharacterized protein LOC103989001 isoform X1
TrEMBLM0T9V70.0M0T9V7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P24610_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1168446