PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P24430_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HSF
Protein Properties Length: 308aa    MW: 35690.2 Da    PI: 5.759
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P24430_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.93.9e-34421332102
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k++++++d+ +++++sws ++nsfvv+d++ fa ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g
  GSMUA_Achr6P24430_001  42 FLSKTFDMVDDPLTDQVVSWSLTSNSFVVWDPHAFAMTLLPRYFKHRNFSSFVRQLNTYGFRKVDADR---------WEFANEGFLRG 120
                            9********************999*****************************************999.........*********** PP

                            XXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkks 102
                            +k+ll+++kr+k 
  GSMUA_Achr6P24430_001 121 QKHLLKTVKRRKP 133
                            **********985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.9E-5738131IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.43E-3338131IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.5E-3738131IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-184265IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-3042131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-188092IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434081105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-1893105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDPLLDILNE EYLEASSFYT QVPPVEPPRP MKGLHEVGPP PFLSKTFDMV DDPLTDQVVS  60
WSLTSNSFVV WDPHAFAMTL LPRYFKHRNF SSFVRQLNTY GFRKVDADRW EFANEGFLRG  120
QKHLLKTVKR RKPPSYPPPR QQSTGPFLEV VKLRQEQQNT RGELQAMEER LQCTEQRQQQ  180
MMNFLARALQ SPDFFQQLVQ HQGKRKELEE AISKKRRRPI EAGPYHVSEL EDLALKIQGL  240
GRNKEDEGKQ EVKQEGGDTE LNDEFWEELL NEQIEEEKGR SESRKGGDAN DIGLLADRLG  300
YLSSTSPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-244013127129Heat shock factor protein 1
5d5v_B2e-244013127129Heat shock factor protein 1
5d5v_D2e-244013127129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130LKTVKRR
2125131KTVKRRK
3203217KRKELEEAISKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009405949.10.0PREDICTED: heat stress transcription factor A-2c-like
RefseqXP_018682706.10.0PREDICTED: heat stress transcription factor A-2c-like
RefseqXP_018682707.10.0PREDICTED: heat stress transcription factor A-2c-like
RefseqXP_018682708.10.0PREDICTED: heat stress transcription factor A-2c-like
RefseqXP_018682709.10.0PREDICTED: heat stress transcription factor A-2c-like
RefseqXP_018682710.10.0PREDICTED: heat stress transcription factor A-2c-like
RefseqXP_018682711.10.0PREDICTED: heat stress transcription factor A-2c-like
SwissprotQ338B01e-118HFA2C_ORYSJ; Heat stress transcription factor A-2c
TrEMBLM0T9T90.0M0T9T9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P24430_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.12e-86heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Singh A, et al.
    OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.).
    Cell Stress Chaperones, 2012. 17(2): p. 243-54
    [PMID:22147560]