PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P24430_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | HSF | ||||||||
Protein Properties | Length: 308aa MW: 35690.2 Da PI: 5.759 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.9 | 3.9e-34 | 42 | 133 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 Fl+k++++++d+ +++++sws ++nsfvv+d++ fa ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g GSMUA_Achr6P24430_001 42 FLSKTFDMVDDPLTDQVVSWSLTSNSFVVWDPHAFAMTLLPRYFKHRNFSSFVRQLNTYGFRKVDADR---------WEFANEGFLRG 120 9********************999*****************************************999.........*********** PP XXXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkks 102 +k+ll+++kr+k GSMUA_Achr6P24430_001 121 QKHLLKTVKRRKP 133 **********985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 6.9E-57 | 38 | 131 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 8.43E-33 | 38 | 131 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 4.5E-37 | 38 | 131 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.3E-18 | 42 | 65 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.0E-30 | 42 | 131 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-18 | 80 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 81 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-18 | 93 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MDPLLDILNE EYLEASSFYT QVPPVEPPRP MKGLHEVGPP PFLSKTFDMV DDPLTDQVVS 60 WSLTSNSFVV WDPHAFAMTL LPRYFKHRNF SSFVRQLNTY GFRKVDADRW EFANEGFLRG 120 QKHLLKTVKR RKPPSYPPPR QQSTGPFLEV VKLRQEQQNT RGELQAMEER LQCTEQRQQQ 180 MMNFLARALQ SPDFFQQLVQ HQGKRKELEE AISKKRRRPI EAGPYHVSEL EDLALKIQGL 240 GRNKEDEGKQ EVKQEGGDTE LNDEFWEELL NEQIEEEKGR SESRKGGDAN DIGLLADRLG 300 YLSSTSPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-24 | 40 | 131 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-24 | 40 | 131 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-24 | 40 | 131 | 27 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 124 | 130 | LKTVKRR |
2 | 125 | 131 | KTVKRRK |
3 | 203 | 217 | KRKELEEAISKKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009405949.1 | 0.0 | PREDICTED: heat stress transcription factor A-2c-like | ||||
Refseq | XP_018682706.1 | 0.0 | PREDICTED: heat stress transcription factor A-2c-like | ||||
Refseq | XP_018682707.1 | 0.0 | PREDICTED: heat stress transcription factor A-2c-like | ||||
Refseq | XP_018682708.1 | 0.0 | PREDICTED: heat stress transcription factor A-2c-like | ||||
Refseq | XP_018682709.1 | 0.0 | PREDICTED: heat stress transcription factor A-2c-like | ||||
Refseq | XP_018682710.1 | 0.0 | PREDICTED: heat stress transcription factor A-2c-like | ||||
Refseq | XP_018682711.1 | 0.0 | PREDICTED: heat stress transcription factor A-2c-like | ||||
Swissprot | Q338B0 | 1e-118 | HFA2C_ORYSJ; Heat stress transcription factor A-2c | ||||
TrEMBL | M0T9T9 | 0.0 | M0T9T9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P24430_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP308 | 37 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 2e-86 | heat shock transcription factor A6B |
Publications ? help Back to Top | |||
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