PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P24230_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ZF-HD | ||||||||
Protein Properties | Length: 223aa MW: 23718.7 Da PI: 12.3373 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 98.1 | 6.6e-31 | 27 | 78 | 5 | 57 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 rY+eCl+NhAa++Gg+++DGCgEfmp ge+g+ +alkCaACgCHRnFHRre GSMUA_Achr6P24230_001 27 RYRECLRNHAAAMGGQSYDGCGEFMPG-GEDGSLEALKCAACGCHRNFHRREG 78 8*************************9.999********************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-19 | 27 | 77 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 6.2E-28 | 27 | 77 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.2E-28 | 27 | 77 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.541 | 28 | 77 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MDLSVVPYKG GSEEAAEAAG GGGGGGRYRE CLRNHAAAMG GQSYDGCGEF MPGGEDGSLE 60 ALKCAACGCH RNFHRREGIS LVQSPPPQPR RTVAAGWGRR RRRGARRQRP RRRGRGSGSA 120 PSSRRSRRRR CRPSRRSWGG ASRSRTTSRW TSSAFRSASS ATSSRSGCTT TRTTSPPPPP 180 PLPPTPLPPP PPLPLPQSLP PAMPPPPRPS GSSPTRMVHI VSA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 129 | RRRGRGSGSAPSSRRSRRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | M0T9R9 | 1e-149 | M0T9R9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P24230_001 | 1e-150 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1431 | 34 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 4e-25 | homeobox protein 31 |