PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P23840_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 235aa MW: 26678 Da PI: 8.4797 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 151.1 | 5.4e-47 | 15 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeelvv+yL++kv +l++ ++i+e+++ k++PwdLp + e+e y F r+ ky++g+ +nra++sgyWkat k GSMUA_Achr6P23840_001 15 LPPGFRFHPTDEELVVQYLRRKVFCCPLPT-SIIPEINLAKLDPWDLPG---GCEEERYCFNLREAKYRNGSWSNRAARSGYWKATRK 98 79***************************9.89***************4...356899****************************** PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 dk+++s +++vg+kk+Lvfy+g+ p+g+ktdWvmheyrl GSMUA_Achr6P23840_001 99 DKQITSPrCSQVVGMKKVLVFYRGKPPTGTKTDWVMHEYRL 139 ******878899***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.94E-56 | 9 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.661 | 15 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-25 | 16 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MESKPSFLRH GVLRLPPGFR FHPTDEELVV QYLRRKVFCC PLPTSIIPEI NLAKLDPWDL 60 PGGCEEERYC FNLREAKYRN GSWSNRAARS GYWKATRKDK QITSPRCSQV VGMKKVLVFY 120 RGKPPTGTKT DWVMHEYRLA GTESTAQRHN STHSGDWVLC RIFKKKRATK MDVETEEGDE 180 LPVTNSGIDF MGQRDRDQNH SSSLSESSCI TELSDGSSNG EETSSRSSIP QGSEP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-50 | 13 | 170 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-50 | 13 | 170 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-50 | 13 | 170 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-50 | 13 | 170 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-50 | 13 | 170 | 18 | 173 | NAC domain-containing protein 19 |
3swm_B | 5e-50 | 13 | 170 | 18 | 173 | NAC domain-containing protein 19 |
3swm_C | 5e-50 | 13 | 170 | 18 | 173 | NAC domain-containing protein 19 |
3swm_D | 5e-50 | 13 | 170 | 18 | 173 | NAC domain-containing protein 19 |
3swp_A | 5e-50 | 13 | 170 | 18 | 173 | NAC domain-containing protein 19 |
3swp_B | 5e-50 | 13 | 170 | 18 | 173 | NAC domain-containing protein 19 |
3swp_C | 5e-50 | 13 | 170 | 18 | 173 | NAC domain-containing protein 19 |
3swp_D | 5e-50 | 13 | 170 | 18 | 173 | NAC domain-containing protein 19 |
4dul_A | 4e-50 | 13 | 170 | 15 | 170 | NAC domain-containing protein 19 |
4dul_B | 4e-50 | 13 | 170 | 15 | 170 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009405877.1 | 1e-177 | PREDICTED: NAC domain-containing protein 83-like | ||||
Swissprot | Q9FY93 | 2e-69 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | M0T9N2 | 1e-176 | M0T9N2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P23840_001 | 1e-176 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6317 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 4e-71 | NAC domain containing protein 83 |
Publications ? help Back to Top | |||
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