PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P22920_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 227aa    MW: 24987.5 Da    PI: 9.4064
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P22920_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.51.2e-32148206159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+
  GSMUA_Achr6P22920_001 148 LDDGYRWRKYGQKAVKNSAYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 206
                            59********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.1E-33135206IPR003657WRKY domain
SuperFamilySSF1182902.48E-28141207IPR003657WRKY domain
PROSITE profilePS5081128.828143208IPR003657WRKY domain
SMARTSM007745.6E-38148207IPR003657WRKY domain
PfamPF031069.2E-26149206IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MLWLTRPQPL PNSQTLSPPI LSSINHPCVA LMQQSSMESL EDEEQAQLAP PASGSTLCPP  60
PYVGQPAPFP PPELTWGVDL GSLFQVLQQQ QQQAAAAPMA VTELTVGRGS GSGAGGDREK  120
GKGGSGGREK KVGRPRFAFQ TKSPNDILDD GYRWRKYGQK AVKNSAYPRS YYRCTHHTCN  180
VKKQVQRLSK DTSIVVTTYE GIHNHPCEKL MEALTPLLKQ IQFLTRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-24138205774Probable WRKY transcription factor 4
2lex_A3e-24138205774Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00317DAPTransfer from AT2G46130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018683330.11e-145PREDICTED: probable WRKY transcription factor 43 isoform X1
TrEMBLM0T9E01e-168M0T9E0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P22920_0011e-169(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46130.13e-56WRKY DNA-binding protein 43