PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P22280_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 411aa    MW: 43815.3 Da    PI: 8.2803
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P22280_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.51.6e-42106181176
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                            +CqvegCeadls +k y+ rhkvC +hskap+v+v g+eqrfCqqCsrfh+lsefD++krsCrrrLa+hnerrrk+
  GSMUA_Achr6P22280_001 106 RCQVEGCEADLSGVKAYYCRHKVCGMHSKAPKVVVGGMEQRFCQQCSRFHQLSEFDQGKRSCRRRLAGHNERRRKP 181
                            6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.9E-35101168IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.53104181IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.97E-40105184IPR004333Transcription factor, SBP-box
PfamPF031101.9E-33107180IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MPCGKTQTPL RLLCFTPTPL PKSHSLLPFL KMPTPSPLPP SLLLVEHMVG LSNDTLHGLM  60
FGEKVYFEDA VGGGGSDSTS KAPPAPSTAP KKGKAVVHGV QQQPPRCQVE GCEADLSGVK  120
AYYCRHKVCG MHSKAPKVVV GGMEQRFCQQ CSRFHQLSEF DQGKRSCRRR LAGHNERRRK  180
PPFSPRYAHL APPSFHEPGR FRSFLMDFAY PNISSSTGAR DICPTVMAGD QVATNHWNDV  240
VDAPSDADAD ADAAAAAAAA PVHGAGSRSH PYSQGSTGQI LYSSPEFPPG ECLGGALDAS  300
CALSLLSTRP RGDHTSRSRR LPTISASGGL NASSSILAHS LVSNNHTANS ASFGHQGSRN  360
SWHEMGMDAA GGSHFSGELE LALQGNGQCL GHGLLGREYD HSGHNIMHWS L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-291071801184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009405686.10.0PREDICTED: squamosa promoter-binding-like protein 14
TrEMBLM0T9760.0M0T976_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P22280_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25273787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57920.15e-42squamosa promoter binding protein-like 15