PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P22160_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 351aa    MW: 38695.5 Da    PI: 6.0168
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P22160_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.61.2e-33212269259
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            +Dgy+WrKYGqK vk+s+fprsYYrCts +Cpvkk+vers +dp+vv++tYeg+H+h+
  GSMUA_Achr6P22160_001 212 EDGYRWRKYGQKAVKNSPFPRSYYRCTSLKCPVKKRVERSYQDPTVVITTYEGKHTHQ 269
                            8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-35196271IPR003657WRKY domain
SuperFamilySSF1182903.14E-29203271IPR003657WRKY domain
PROSITE profilePS5081131.525206271IPR003657WRKY domain
SMARTSM007742.9E-39211270IPR003657WRKY domain
PfamPF031062.8E-26212269IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MSGEDGELYH HDHGFFQDRD EFAFQDERDD LSSLFAQNQG GGGAANSLQG LDPYAVSPFL  60
SFDDFLDGSA VRHGTLASAF DASYLHPDVF GNGEITLVDS TAVKSGNDLA PLTGCGGGDG  120
TSPVSPNSSV SSSSTEAAVE DDSGRRKKDQ LKQEVDEEEE EEIKQLKRQG KAGEEAERDK  180
AKKQNKPRKK GEKRQREPRF AFMTKSEVDH LEDGYRWRKY GQKAVKNSPF PRSYYRCTSL  240
KCPVKKRVER SYQDPTVVIT TYEGKHTHQS PATARASAQQ LLAPPPPAAA STSFRNHLLM  300
QQPRAPSAIQ QHNANVSVNL PGFQSPLQQP QVADYGLLQD IVPSFTQYSE P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-27201272778Probable WRKY transcription factor 4
2lex_A4e-27201272778Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177189RDKAKKQNKPRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009405662.10.0PREDICTED: probable WRKY transcription factor 71
TrEMBLM0T9640.0M0T964_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P22160_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.14e-48WRKY DNA-binding protein 23