PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P22130_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB_related | ||||||||
Protein Properties | Length: 89aa MW: 10006.1 Da PI: 7.5093 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.6 | 1.6e-09 | 8 | 53 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WTt + + +a + + g +W++Iar +g g+t +++ ++ GSMUA_Achr6P22130_001 8 SSWTTKQNKMFEKALAVFDEGtpdRWHKIARAVG-GKTSDEVRRHYE 53 58*****************99*************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 7.3E-7 | 6 | 58 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.435 | 8 | 56 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 5.06E-13 | 8 | 63 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-6 | 8 | 53 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-4 | 9 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.16E-7 | 9 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MASGSVTSSW TTKQNKMFEK ALAVFDEGTP DRWHKIARAV GGKTSDEVRR HYELLVEDLR 60 RIEKGHFSYA DCPSSGNSSN LFDSTYCIS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-22 | 10 | 76 | 11 | 77 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009405682.2 | 1e-53 | PREDICTED: protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 4e-27 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
Swissprot | Q6NNN0 | 3e-27 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | M0T961 | 9e-61 | M0T961_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P22130_001 | 2e-61 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 3e-30 | RAD-like 6 |