PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P21220_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 279aa MW: 31801.2 Da PI: 9.2339

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P21220_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.5	2e-12	217	261	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + Er RR ri +++ L++l+P+ +k s a++L +A+e+Ik+Lq GSMUA_Achr6P21220_001 217 ISERERRTRISEKLKSLQDLVPNM----DKQTSTADMLDLAIEHIKELQ 261 78*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.046	210	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.72E-17	213	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.27E-13	214	265	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.1E-16	215	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.6E-14	216	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.2E-10	217	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MYIYIYIYIY IHTYIYIYRH TYIYIVYIKY CTQNKNPNFA RLPHWVMDHP IVVTRFVQGP 60 ALKGFSALRD IRSFSRPGIG GVNEMASRRL KSQLSFSGTG QPSQVSQIGI PEIGDNVGCS 120 NNSDVRSGSV SQSYISSNFS IGSWDDTNSI IFSAPSSKRA KDNNGDIITM SNIESQCSLP 180 STTLEMDTMD KYLQFQHDQV PFKVRAKRGC ATHPRSISER ERRTRISEKL KSLQDLVPNM 240 DKQTSTADML DLAIEHIKEL QSQLQVLKQE QENCKCKKA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009405556.1	1e-156	PREDICTED: transcription factor bHLH128-like isoform X1
Swissprot	Q8H102	2e-49	BH128_ARATH; Transcription factor bHLH128
TrEMBL	M0T8X0	0.0	M0T8X0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P21220_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7071	37	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	5e-41	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]