PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P20870_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 223aa MW: 25491.9 Da PI: 8.4638 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 144.3 | 6.6e-45 | 15 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtde+lvv+yLk+kv + +l++ ++i+e+d+ k++Pw+Lp +e y F +r+ ky++gkr+nra++sgyWka gk GSMUA_Achr6P20870_001 15 LPPGFRFHPTDEDLVVQYLKRKVFSCPLPA-SIIPEIDLGKYDPWNLP------GDERYCFNRREAKYPNGKRSNRAARSGYWKARGK 95 79****************************.89**************9......4689****************************** PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 dk+++++ +++vg++++Lvfy+g+ p+++ tdW+mheyrl GSMUA_Achr6P20870_001 96 DKQIVASgCNQVVGMRRVLVFYRGKPPTSSPTDWMMHEYRL 136 *****9977889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-53 | 8 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.995 | 15 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-25 | 16 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MSHKPSLVRF GALRLPPGFR FHPTDEDLVV QYLKRKVFSC PLPASIIPEI DLGKYDPWNL 60 PGDERYCFNR REAKYPNGKR SNRAARSGYW KARGKDKQIV ASGCNQVVGM RRVLVFYRGK 120 PPTSSPTDWM MHEYRLAGSD GRSLGLMIPS QDWVLCRIFK RRRAPIVVDE EEDIITNDVT 180 DFRDFMDERE GDPTPSSSSS PEKSCVTELF DESSRGEETN SPP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-46 | 13 | 162 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-46 | 13 | 162 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-46 | 13 | 162 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-46 | 13 | 162 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-46 | 13 | 162 | 18 | 169 | NAC domain-containing protein 19 |
3swm_B | 8e-46 | 13 | 162 | 18 | 169 | NAC domain-containing protein 19 |
3swm_C | 8e-46 | 13 | 162 | 18 | 169 | NAC domain-containing protein 19 |
3swm_D | 8e-46 | 13 | 162 | 18 | 169 | NAC domain-containing protein 19 |
3swp_A | 8e-46 | 13 | 162 | 18 | 169 | NAC domain-containing protein 19 |
3swp_B | 8e-46 | 13 | 162 | 18 | 169 | NAC domain-containing protein 19 |
3swp_C | 8e-46 | 13 | 162 | 18 | 169 | NAC domain-containing protein 19 |
3swp_D | 8e-46 | 13 | 162 | 18 | 169 | NAC domain-containing protein 19 |
4dul_A | 7e-46 | 13 | 162 | 15 | 166 | NAC domain-containing protein 19 |
4dul_B | 7e-46 | 13 | 162 | 15 | 166 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00507 | DAP | Transfer from AT5G13180 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009405516.1 | 1e-154 | PREDICTED: NAC domain-containing protein 83-like | ||||
Swissprot | Q9FY93 | 1e-73 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | M0T8T5 | 1e-164 | M0T8T5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P20870_001 | 1e-165 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6317 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 2e-75 | NAC domain containing protein 83 |
Publications ? help Back to Top | |||
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