PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P19850_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 855aa    MW: 94910.6 Da    PI: 6.1865
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P19850_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.4e-24127227198
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f+k+lt sd++++g +++p++ ae+        +++++e  +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+
  GSMUA_Achr6P19850_001 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPAE--ELIARDLHGKEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVL 212
                            99*****************************95544444..8********************************************** PP

                            EEE-SSSEE..EEEEE- CS
                     B3  82 Fkldgrsefelvvkvfr 98 
                            F   ++++ +l+++++ 
  GSMUA_Achr6P19850_001 213 FI--WNENNQLLLGIRH 227
                            **..7888888999886 PP
2Auxin_resp1201.8e-39253336183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aahaast+s F+v+YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k
  GSMUA_Achr6P19850_001 253 AAHAASTNSRFTVFYNPRASPSEFVIPLAKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVK 336
                            79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-48112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.7E-42120242IPR015300DNA-binding pseudobarrel domain
CDDcd100172.38E-22126219No hitNo description
PfamPF023624.5E-22127228IPR003340B3 DNA binding domain
SMARTSM010194.7E-25127229IPR003340B3 DNA binding domain
PROSITE profilePS5086313.14127229IPR003340B3 DNA binding domain
PfamPF065071.8E-34253336IPR010525Auxin response factor
SuperFamilySSF542773.66E-7702783No hitNo description
PfamPF023095.8E-8702794IPR033389AUX/IAA domain
PROSITE profilePS5174524.21708792IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 855 aa     Download sequence    Send to blast
MRLSSSNLTS EAHEEEKQCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE  60
IDSQIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSSQEQKDP YLLTELGTPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPAEELIAR DLHGKEWKFR  180
HIFRGQPKRH LLTTGWSIFV SAKRLVAGDS VLFIWNENNQ LLLGIRHANR PQTVMPSSVL  240
SSDSMHIGLL AAAAHAASTN SRFTVFYNPR ASPSEFVIPL AKYIKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVRWSNS HWRSVKVGWD ESTAGEKQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPIG LPFFQGGKDD GIDLNSSLMW LRDGGIPGIQ SMNSSSIAVT  420
PWMQPSLDAS MLGMQPDMYK TVVAGALQEM RTMNPIKQVS TAMLQFQQPN NTASRSNPIL  480
PSQTQSSFIQ HHLQQGHSFS EQQEQPQVRQ SHYQQVPNVP STLSQLASSS QSQSTTLHMI  540
SPSFQLKDFP DSNGNSVSAS TASPLNNILH QFSTEETSQH LSLPRYVQPI NSGTTHPNIS  600
LQSVTLPPFP GRECSVNQSG NMDTQNQHLF SVSENSSLLV QNGIPSLSAA VSENDSMNMT  660
YAASRFLSSS GNDFTINQAL SGSNGMDESG SGFLRYPENV DQVNPQSGTF VKVYRSGSFG  720
RSLDISRFSS YHELRSELGH LFGLEGQLED PQRSGWQLVF VDRENDVLLV GDDPWQEFVN  780
NVSCIKILSP QEVQQMGQQG VDFASLPPIE KLQIKAWIPL WYGSPPSDEC LVEGGGTLPL  840
DLEVGRMWPP LIPAH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-161335734388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399230.10.0PREDICTED: auxin response factor 17
RefseqXP_009399231.10.0PREDICTED: auxin response factor 17
RefseqXP_009399232.10.0PREDICTED: auxin response factor 17
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLM0T8I30.0M0T8I3_MUSAM; Auxin response factor
STRINGGSMUA_Achr6P19850_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]