PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P18640_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 192aa MW: 21424.2 Da PI: 5.2791 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 109.4 | 4.2e-34 | 4 | 121 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGf+F Ptdeelvv++L +k+++ +++ +v++ +d+ +++Pw+L+ k+ ++ +++yfFs++ n++ sgyW a g GSMUA_Achr6P18640_001 4 LPPGFQFFPTDEELVVHFLYRKASRLPCQP-DVVPFLDLRRFDPWQLNGKALQGGNHCYFFSHAT--------VNKVSPSGYWMAVGA 82 79*************************999.99**************977778899******974........577899********* PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++v+s ++++vg+k+tLvf+ g+ap g+kt+Wvmheyrl GSMUA_Achr6P18640_001 83 KETVTS-GDKDVGTKTTLVFHIGEAPLGVKTSWVMHEYRL 121 *****9.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.26E-42 | 2 | 126 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 37.781 | 4 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-21 | 5 | 121 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MSDLPPGFQF FPTDEELVVH FLYRKASRLP CQPDVVPFLD LRRFDPWQLN GKALQGGNHC 60 YFFSHATVNK VSPSGYWMAV GAKETVTSGD KDVGTKTTLV FHIGEAPLGV KTSWVMHEYR 120 LLEDGAAVPS SRTNRNSSSS ASRARGNKRP DLNLAICRVQ EASFFGVEET ELSCLDEVFL 180 SLDDLDEISM PY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 8e-36 | 4 | 123 | 20 | 147 | NAC domain-containing protein 19 |
3swm_B | 8e-36 | 4 | 123 | 20 | 147 | NAC domain-containing protein 19 |
3swm_C | 8e-36 | 4 | 123 | 20 | 147 | NAC domain-containing protein 19 |
3swm_D | 8e-36 | 4 | 123 | 20 | 147 | NAC domain-containing protein 19 |
3swp_A | 8e-36 | 4 | 123 | 20 | 147 | NAC domain-containing protein 19 |
3swp_B | 8e-36 | 4 | 123 | 20 | 147 | NAC domain-containing protein 19 |
3swp_C | 8e-36 | 4 | 123 | 20 | 147 | NAC domain-containing protein 19 |
3swp_D | 8e-36 | 4 | 123 | 20 | 147 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009404964.1 | 1e-143 | PREDICTED: NAC domain-containing protein 104 | ||||
Swissprot | Q8GWK6 | 1e-52 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | M0T862 | 1e-142 | M0T862_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P18640_001 | 1e-142 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3667 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 2e-53 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
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