PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P17720_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 290aa MW: 32509.8 Da PI: 6.8518 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.1 | 2.1e-50 | 8 | 132 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeelv++yL++++++ ++++ +i++vd+yk++Pw+Lp ++ +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg GSMUA_Achr6P17720_001 8 LPPGFRFHPTDEELVMHYLCRRCAAIPVPV-PIIADVDLYKYDPWQLPGMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGA 94 79***************************9.88***************6666689********************************* PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 dk+v s + v +kk Lvfy+g+ pkgekt+W+mheyrl GSMUA_Achr6P17720_001 95 DKPVGS--PRPVAIKKALVFYSGKPPKGEKTNWIMHEYRL 132 ****99..779***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.15E-62 | 5 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.531 | 8 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-26 | 9 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MNGSELALPP GFRFHPTDEE LVMHYLCRRC AAIPVPVPII ADVDLYKYDP WQLPGMALYG 60 EKEWYFFSPR DRKYPNGSRP NRAAGSGYWK ATGADKPVGS PRPVAIKKAL VFYSGKPPKG 120 EKTNWIMHEY RLADVDRSAR KNRSLRLDDW VLCRIYHKKG EVGKQANPGR RAAGPKKTRP 180 AQPDSKQGVV SHVPAPRSAM ICFDSPESLP PLTGESTDSE HVLSSSEFAC EREVESHAHD 240 YDDWDMELGV GLIDEEDATG VGGLPAVSPA FFHDPFPDLL VHLQRPFWEI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-76 | 4 | 164 | 11 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009404860.1 | 0.0 | PREDICTED: NAC domain-containing protein 48-like isoform X3 | ||||
Swissprot | Q39013 | 1e-108 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | M0T7X0 | 0.0 | M0T7X0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P17720_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3417 | 37 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-110 | NAC family protein |