PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P17420_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ZF-HD | ||||||||
Protein Properties | Length: 207aa MW: 23195.4 Da PI: 9.1169 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 104.5 | 6.5e-33 | 53 | 109 | 3 | 60 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +v+Y+eClkNhAas+Gg+a+DGCgEfmp geegt +alkC+ACgCHRnFHR+e+e e GSMUA_Achr6P17420_001 53 GVKYRECLKNHAASIGGNATDGCGEFMPG-GEEGTLEALKCSACGCHRNFHRKETEGE 109 689*************************9.999*********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.9E-30 | 54 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.2E-30 | 55 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 6.0E-23 | 55 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.313 | 56 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 5.43E-19 | 135 | 200 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.5E-29 | 139 | 201 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.7E-26 | 140 | 195 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MDLSGHEGEI PIPIKNTHDI SSSGPPPPLA TATMVDYHHH HNPYPYSTKK RLGVKYRECL 60 KNHAASIGGN ATDGCGEFMP GGEEGTLEAL KCSACGCHRN FHRKETEGES SWGCYHPLTA 120 RNAMNQRGLL LSGADAFGLK RLRTKFTPEQ KEKMLCFAEK VGWRLQKQEE SAVQQLCQEI 180 GVRRRVLKVW MHNNKHHLAK KSPSQLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-24 | 140 | 196 | 18 | 74 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU200163 | 2e-46 | EU200163.1 Asparagus officinalis zinc finger-homeodomain protein 1 (ZHD1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009404830.1 | 1e-148 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Refseq | XP_018683197.1 | 1e-148 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Refseq | XP_018683198.1 | 1e-148 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Refseq | XP_018683199.1 | 1e-148 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Refseq | XP_018683200.1 | 1e-148 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Swissprot | Q9M9S0 | 2e-60 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | M0T7U0 | 1e-154 | M0T7U0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P17420_001 | 1e-155 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP815 | 35 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 9e-63 | homeobox protein 31 |