PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P16760_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 482aa    MW: 52930.4 Da    PI: 7.9039
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P16760_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.51e-31192248259
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            +DgynWrKYGqK+v++se+prsYY+C++++Cpvkkkve+sa d++++ei+Y+g+Hnh+
  GSMUA_Achr6P16760_001 192 SDGYNWRKYGQKMVRSSEYPRSYYKCSHPNCPVKKKVEHSA-DGQITEIIYKGQHNHQ 248
                            7****************************************.***************8 PP
2WRKY106.21.7e-33370428159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gC+v+k+ver+ +dpk v++tYeg+Hnh+
  GSMUA_Achr6P16760_001 370 LDDGYRWRKYGQKVVKGNPNPRSYYKCTYLGCNVRKHVERAPTDPKSVITTYEGKHNHD 428
                            59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-28186250IPR003657WRKY domain
SuperFamilySSF1182902.88E-25189250IPR003657WRKY domain
SMARTSM007741.9E-34191249IPR003657WRKY domain
PROSITE profilePS5081121.838192250IPR003657WRKY domain
PfamPF031064.2E-24193248IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-36356430IPR003657WRKY domain
SuperFamilySSF1182902.88E-29362430IPR003657WRKY domain
PROSITE profilePS5081137.883365430IPR003657WRKY domain
SMARTSM007743.9E-39370429IPR003657WRKY domain
PfamPF031066.0E-26371428IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MLPPRSSMAS LFHEGGGGAS EVSPGPLTLV SSFFADDPET ECRSFTQLLV GAMNSPVAAA  60
RRPAGISWEQ EKQNRPASLT VSQPQAFTIA PGLSPSSLLD SPGFFSSGLG TFVMSHQEAL  120
AQVTAQASQS QFKMLSQAEY PSEFVTTPPS SQQLIQETPT RKRNNSVFES AEGSLSDQIS  180
HPTAIVVDKP ASDGYNWRKY GQKMVRSSEY PRSYYKCSHP NCPVKKKVEH SADGQITEII  240
YKGQHNHQRP TPNKRFKEGD SFLSGSNEIT ESLDNPSTPE SGFHGNHGNL RRSNGMTAAT  300
SASKRDREFD YGAPEQLSGS TDREEVSETQ TDGRDNHDAD AKRMNVSASS QTTSAEPKIV  360
VQTTSEVDLL DDGYRWRKYG QKVVKGNPNP RSYYKCTYLG CNVRKHVERA PTDPKSVITT  420
YEGKHNHDVP TSRNSSRNLA CAGVASSIVQ SNSQPSLRTT NFRNNDQQPV AVLRLKEERE  480
IT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-39193430877Probable WRKY transcription factor 4
2lex_A5e-39193430877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009404769.10.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9XI901e-125WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLM0T7M40.0M0T7M4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P16760_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-114WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]