PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P16450_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 873aa    MW: 96730.1 Da    PI: 7.1911
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P16450_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.81.7e-22161262199
                            EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                            f+k+lt sd++++g +++ +++a+e+     ++ ++ s++l+ +d++  +W++++i+r++++r++l++GW+ Fv++++L +gD ++F 
  GSMUA_Achr6P16450_001 161 FCKTLTASDTSTHGGFSVLRRHADEClppldMSRQPPSQELVAKDLHRVEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL 248
                            99*****************************444556679************************************************ PP

                            E-SSSEE..EEEEE-S CS
                     B3  84 ldgrsefelvvkvfrk 99 
                              + +++el+v+v+r+
  GSMUA_Achr6P16450_001 249 --RGENGELRVGVRRA 262
                            ..449999*****996 PP
2Auxin_resp118.26.6e-39287369183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            a+ha++t+++F+v+Y+Pr+s+seF+v+++++++++k++ svGmRfkm+fe+e+++e+r++Gt+vg+ d+dp+rWp+SkW+sLk
  GSMUA_Achr6P16450_001 287 AWHAVNTGTMFTVYYKPRTSPSEFIVPFDQYVESIKSNHSVGMRFKMRFEGEEAPEQRFTGTIVGIGDADPSRWPGSKWKSLK 369
                            89*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-40154276IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.47E-40154290IPR015300DNA-binding pseudobarrel domain
CDDcd100175.76E-21160261No hitNo description
PfamPF023623.6E-20161262IPR003340B3 DNA binding domain
PROSITE profilePS5086311.166161263IPR003340B3 DNA binding domain
SMARTSM010193.1E-22161263IPR003340B3 DNA binding domain
PfamPF065073.4E-36287369IPR010525Auxin response factor
PfamPF023091.6E-11698823IPR033389AUX/IAA domain
SuperFamilySSF542772.62E-11737815No hitNo description
PROSITE profilePS5174523.4738820IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 873 aa     Download sequence    Send to blast
MASSELSVKG SSGGQGQSLS SGCSEMHEGP SVKVGGDAEG SLGFSGGAVC GKDALYTELW  60
LACAGPLVTI PRVGEKVFYF PQGHIEQVEA STNQGADQQM PVYNLPWKIL CRVMNVDLKA  120
EPDTDEVFAQ VTLLPVSKLD ENTVEKEMLS TPPPRPHVYS FCKTLTASDT STHGGFSVLR  180
RHADECLPPL DMSRQPPSQE LVAKDLHRVE WRFRHIFRGQ PRRHLLQSGW SVFVSSKRLV  240
AGDAFIFLRG ENGELRVGVR RAMRQQANVP SSVISSHSMH LGVLATAWHA VNTGTMFTVY  300
YKPRTSPSEF IVPFDQYVES IKSNHSVGMR FKMRFEGEEA PEQRFTGTIV GIGDADPSRW  360
PGSKWKSLKV RWDEPSSIPR PERVSPWKIE PVLTPPLNPL PMPRTKKPRT TSFPCSPDSS  420
VPKREDAAPK VTAEPSQSYG APRVLQGPEM MTLRSSYADS NESGATHKPV VWSMNDEEKN  480
DVPTRRRLGS DSRMLIKRHE QTYNGIFSGY CPPDSSGFQT PFFEQTPGDK NILKPHFQVQ  540
EAKHNYSPGS WSLIPPNSNF GMSDHDFKTT AQIGEVSYQK AGNCRYGTRG FFSELQSLGS  600
IQNSPNWFTH LLPDSQIENM AQPRVVKPLP MLPSQTDVAK PKANSGYKLF GFHLNSNPVI  660
SESVMPRSNS ADILMPHSHP EAALPYQQGL EVDKHSESSV TERLVGAAPT NGETEKLIHV  720
SPRTAQDFQN KLQNGSTRSC TKVHKQGIAL GRSVDLTKFN GYDELIAELD HMFEFEGALV  780
SPNKSWLVVY TDNEGDMMLV GDDPWKEFCN MVHKIYIYTR EEVHRMNPGT LSSRVEESPA  840
TSDGRIAGKE PKGPVPAAIS ENSERCPSIG TAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-174413927355Auxin response factor 1
4ldw_A1e-174413927355Auxin response factor 1
4ldw_B1e-174413927355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018683371.10.0PREDICTED: auxin response factor 23-like isoform X2
SwissprotQ2QQX60.0ARFX_ORYSJ; Auxin response factor 24
TrEMBLM0T7J30.0M0T7J3_MUSAM; Auxin response factor
STRINGGSMUA_Achr6P16450_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li G, et al.
    Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(28): p. 10377-82
    [PMID:24982173]