PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P15370_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 209aa MW: 24147 Da PI: 8.3326 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.9 | 3e-15 | 4 | 51 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++lv v++lG ++W+ a+ g++R++k+c++rw +yl GSMUA_Achr6P15370_001 4 KGPWTEQEDLQLVWFVRLLGERRWDFLAKVSGLNRSGKSCRLRWVNYL 51 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 59.4 | 8.1e-19 | 57 | 102 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+T++E++l v++++++G++ W++Iar+++ gRt++++k++w++++ GSMUA_Achr6P15370_001 57 RGRMTPQEEDLVVELHAKWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 102 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.729 | 1 | 51 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.98E-27 | 3 | 98 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.6E-13 | 3 | 53 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-14 | 4 | 51 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-18 | 5 | 58 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.77E-8 | 6 | 51 | No hit | No description |
PROSITE profile | PS51294 | 27.249 | 52 | 106 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-17 | 56 | 104 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-16 | 57 | 101 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-24 | 59 | 105 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.78E-11 | 59 | 102 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MTRKGPWTEQ EDLQLVWFVR LLGERRWDFL AKVSGLNRSG KSCRLRWVNY LHPGLKRGRM 60 TPQEEDLVVE LHAKWGNRWS RIARRLPGRT DNEIKNYWRT HMRKKAQERR TCSSPSPSSS 120 SSSNGPPSEL RVEKHDGDSV AEGSAFTSGL ELTDDEVKGY TMDQIWNEIA ASESCNMECP 180 PTSSSIWEDK SESLWRLDED LRISNPPRV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 7e-26 | 1 | 106 | 1 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 7e-26 | 1 | 106 | 1 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009404618.1 | 1e-152 | PREDICTED: transcription factor MYB59-like isoform X2 | ||||
Swissprot | Q4JL84 | 1e-74 | MYB59_ARATH; Transcription factor MYB59 | ||||
TrEMBL | M0T785 | 1e-151 | M0T785_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P15370_001 | 1e-152 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 2e-74 | myb domain protein 59 |
Publications ? help Back to Top | |||
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