PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P14840_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 290aa    MW: 32860.6 Da    PI: 5.6356
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P14840_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.1e-162269148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+WT eEde l+  v++ G g+W+t +++ g+ R++k+c++rw +yl
  GSMUA_Achr6P14840_001 22 RGPWTSEEDEVLASFVRREGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 69
                           89******************************99************97 PP
2Myb_DNA-binding475.8e-1580120648
                            HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  GSMUA_Achr6P14840_001  80 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 120
                            89***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-211371IPR009057Homeodomain-like
PROSITE profilePS5129414.9191769IPR017930Myb domain
SuperFamilySSF466891.36E-2819116IPR009057Homeodomain-like
SMARTSM007174.5E-112171IPR001005SANT/Myb domain
PfamPF002495.0E-142269IPR001005SANT/Myb domain
CDDcd001673.72E-92469No hitNo description
PROSITE profilePS5129424.65570124IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2472125IPR009057Homeodomain-like
SMARTSM007179.9E-1474122IPR001005SANT/Myb domain
CDDcd001671.61E-1180120No hitNo description
PfamPF002499.5E-1480120IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEVEDKQRRG PTPCCGKVGL KRGPWTSEED EVLASFVRRE GEGRWRTLPK RAGLLRCGKS  60
CRLRWMNYLR PSIKHGPIAP DEEDLILRLH RLLGNRWSLI AGRIPGRTDN EIKNYWNTHL  120
SKKLVRQGID PRNHKPLATS VADAIHQPIS PQLYRNPNPS AIPSTAPTLL RAEDTQKNFS  180
DTLNLQQNDD GIGIECYTDD IFSSFLDSLI NDDIFQPQHN DIIDDENNND ISRSNNSDGS  240
NQRVVPAAYA YTAPSVPAYE LGTFWEDDLM AQTGIEEDVH EQFADHAGKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24201245108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009405225.20.0PREDICTED: transcription repressor MYB5-like
SwissprotQ388508e-85MYB5_ARATH; Transcription repressor MYB5
TrEMBLM0T7320.0M0T732_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P14840_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-87myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]