PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P14430_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | TCP | ||||||||
Protein Properties | Length: 240aa MW: 25921 Da PI: 9.345 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 105.5 | 8.6e-33 | 55 | 135 | 2 | 80 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaessss 80 +g+kd hsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ i++l++ ++ +++++ a +s s GSMUA_Achr6P14430_001 55 TGQKDCHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLMKNAKAVIDQLAEVPAWTPTSTltAAITSTS 135 799************************************************************955544333222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.3E-30 | 55 | 139 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.696 | 57 | 115 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MGEGQNHHGG LGFRQLAVHD RHQQRLAQPR SGFGKLRGAG GEILEEHGGS IVRSTGQKDC 60 HSKVCTAKGP RDRRVRLSAH TAIQFYDVQD RLGYDRPSKA VDWLMKNAKA VIDQLAEVPA 120 WTPTSTLTAA ITSTSRVPPP SNQSPVAEPD QRMAPWNVAE TSDGVGHGGF PFSVPPPQAV 180 PTHSVLCPSQ LFSQRGPLQS SNSPSVHSWA EPMAANAEIQ MHPGLHHSVS SSTFQHGFRA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-21 | 62 | 115 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-21 | 62 | 115 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009404497.1 | 1e-104 | PREDICTED: transcription factor PCF5-like | ||||
TrEMBL | M0T6Z1 | 1e-177 | M0T6Z1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P14430_001 | 1e-177 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5839 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 6e-43 | TCP family protein |