PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P13630_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 524aa    MW: 56270.9 Da    PI: 6.7555
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P13630_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.91.1e-29302360259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             Dg++WrKYGqK+ kg+++p++YYrCt+a  Cpv+k+v+r+a+d +++++tYeg+Hnh+
  GSMUA_Achr6P13630_001 302 TDGCQWRKYGQKMAKGNPCPKAYYRCTMAsACPVRKQVQRCADDRSILITTYEGTHNHP 360
                            7***************************999***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-32286362IPR003657WRKY domain
SuperFamilySSF1182904.32E-27294362IPR003657WRKY domain
PROSITE profilePS5081128.323296362IPR003657WRKY domain
SMARTSM007749.4E-35301361IPR003657WRKY domain
PfamPF031065.2E-26303360IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MTHGGTSGPL SLASSLGSRG GVLKRQQPMD SGDHHSISTA IEFPISLNPL IDAPMVVEAK  60
DEVSNDRVVA TEMDFFSGER KDTTSLVEPD LDLKVPSLTR IKKEDLTIQT GLHLHTGNTG  120
SDQSTVDDGL SRNEDDEEGK NELAAMQAEL ARMNEENQKL RGILSQVTTN FNALQMHLAT  180
LMQQRSHQSH ETPQEHETDA KNDGHGGVLV PKQFMDLGPA VNDVEPSNSS TVSPDRSASP  240
PANVEVGSMG YDLHKNDGRS TSDQTWNPNK ALKLNPTNQA QEATMRKARV SVRARSEAPM  300
ITDGCQWRKY GQKMAKGNPC PKAYYRCTMA SACPVRKQVQ RCADDRSILI TTYEGTHNHP  360
LPPAAMAMAS TTSAAASMLL SGSMWSTDGL MNSNFPARTT LPCSSSVATV SASAPFPTVT  420
LDLTKNPNPL QYQRPPTGPF SVPFPGMAAT QFPHQKTHLV MPSPSTAETV KAATAAITTD  480
PNFTAALAAA IKSIIGGNHQ CFNNNNGSSN NVNISNITPH KSCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20288364176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF7755211e-141JF775521.1 Musa acuminata AAA Group WRKY6 transcription factor (WRKY6) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009404403.10.0PREDICTED: probable WRKY transcription factor 31
SwissprotQ9XEC31e-128WRK42_ARATH; WRKY transcription factor 42
TrEMBLM0T6R10.0M0T6R1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P13630_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52653656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.11e-106WRKY family protein