PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P13450_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 339aa    MW: 37425.9 Da    PI: 9.2139
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P13450_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.51.8e-23299186
               trihelix  1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78
                           +Wt+ +v++Li+++++   +  +++           +kk++W++vs++m+++gf +sp+qC++k+++lnkryk++++  +k+ +++++++
  GSMUA_Achr6P13450_001  2 KWTDGMVRLLIQVKSSSAAAAASASasasasasallQKKGKWKSVSRAMMDKGFFVSPQQCEDKFNDLNKRYKRVNDLLGKGtACRVVEN 91
                           7**************777776665445667778888**********************************************55999999 PP

               trihelix 79 cpyfdqle 86
                            ++++ ++
  GSMUA_Achr6P13450_001 92 QALLETMD 99
                           99999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.7E-202124No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MKWTDGMVRL LIQVKSSSAA AAASASASAS ASASALLQKK GKWKSVSRAM MDKGFFVSPQ  60
QCEDKFNDLN KRYKRVNDLL GKGTACRVVE NQALLETMDL SPKAKEEARK LLNSKHLFFR  120
EMCAYHNAGA YSACAAPPPP QMPPPHSSDQ QQHCFHHPPG RADTALSTRK VAGGSRAAID  180
DDDDDDMEGH NHKRYGHHHQ HKHDEVGEDE DNKKHRKTAS QTSASPPLSL TLSSPSSSAA  240
ELEEQRVAYQ CRAFQLERQR FKWLRFSTNK GREMERMKLE NERLRLENDR MALLLRQREL  300
ELIQGGSGGG GGGGGVSSSA EQQLMLQNTN ANPSSATTV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018682513.11e-170PREDICTED: uncharacterized protein LOC103987728
RefseqXP_018682514.11e-170PREDICTED: uncharacterized protein LOC103987728
RefseqXP_018682515.11e-170PREDICTED: uncharacterized protein LOC103987728
RefseqXP_018682516.11e-170PREDICTED: uncharacterized protein LOC103987728
RefseqXP_018682517.11e-170PREDICTED: uncharacterized protein LOC103987728
TrEMBLM0T6P30.0M0T6P3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P13450_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.12e-48sequence-specific DNA binding transcription factors