PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P13420_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 527aa    MW: 57429.4 Da    PI: 9.6668
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P13420_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.75.5e-17141229186
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                            +W++  +  L++a++e+ e+l+rg+l++ +We+v+  +     ++++ +s +qCk+k++nl+kryk + ++ + +    +s++p+f++
  GSMUA_Achr6P13420_001 141 EWSDTAIGSLLDAYTERYEQLNRGNLRGRDWEDVATIVsercNKQKVGKSVEQCKNKIDNLKKRYKVECQRLSIG-GLPTSHWPWFKK 227
                            5********************************98777665599999*******************887777776.455568****** PP

               trihelix  85 le 86 
                            +e
  GSMUA_Achr6P13420_001 228 ME 229
                            *8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.8E-20139231No hitNo description
Gene3DG3DSA:3.40.1160.103.5E-70275520IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B33.659285521IPR015963Uridylate kinase, bacteria
SuperFamilySSF536339.43E-55286520IPR001048Aspartate/glutamate/uridylate kinase
PfamPF006961.4E-24288500IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042548.06E-116288521No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MASCDDDFAL LGDEAQSQHQ PQARAVPFSA AHRYVTAKAT PISLHPRAHH HLGAASSSAP  60
SVIVSPGKKG VVKGAATSAS HHHHLQHIHH QQQPHHHSPK RKDRDDISDG ESPYCYNSSM  120
AANKKSRPMS SSGDYRKDRE EWSDTAIGSL LDAYTERYEQ LNRGNLRGRD WEDVATIVSE  180
RCNKQKVGKS VEQCKNKIDN LKKRYKVECQ RLSIGGLPTS HWPWFKKMEQ IVGSSSSLKA  240
APDDDKSVTL GGPPAVMRQI KRHPIAPSGP LSTNINSKMK SLSNPRWKRV ILKISGMALA  300
GAGPQNVDPK VIMLIAKEIA IASRAGLEVA IVIGGRNFFC GDTWIAATGI DRATTYQIGM  360
MASLMNAMML QASLEKIGVE ARIQSTLLMQ EIAEPYIRRR AIRHLEKGRV VIFGGAGAAT  420
GNPLFSTDTA AALRASEIHA DAVLKGTTMD GVFNCHPRNN GGSAFEHISF RELVSRGFTA  480
MDMTALNFCE ENNIPVVIFN LLEPGNVSKA LCGDQVGTLV DQSGRIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A2e-642815203239Uridylate kinase
3ek5_B2e-642815203239Uridylate kinase
3ek5_C2e-642815203239Uridylate kinase
3ek5_D2e-642815203239Uridylate kinase
3ek5_E2e-642815203239Uridylate kinase
3ek5_F2e-642815203239Uridylate kinase
3ek6_A2e-642815203239Uridylate kinase
3ek6_B2e-642815203239Uridylate kinase
3ek6_C2e-642815203239Uridylate kinase
3ek6_D2e-642815203239Uridylate kinase
3ek6_E2e-642815203239Uridylate kinase
3ek6_F2e-642815203239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009404384.10.0PREDICTED: uncharacterized protein LOC103987725 isoform X1
TrEMBLM0T6P00.0M0T6P0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P13420_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein