PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P13420_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | Trihelix | ||||||||
Protein Properties | Length: 527aa MW: 57429.4 Da PI: 9.6668 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 53.7 | 5.5e-17 | 141 | 229 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 +W++ + L++a++e+ e+l+rg+l++ +We+v+ + ++++ +s +qCk+k++nl+kryk + ++ + + +s++p+f++ GSMUA_Achr6P13420_001 141 EWSDTAIGSLLDAYTERYEQLNRGNLRGRDWEDVATIVsercNKQKVGKSVEQCKNKIDNLKKRYKVECQRLSIG-GLPTSHWPWFKK 227 5********************************98777665599999*******************887777776.455568****** PP trihelix 85 le 86 +e GSMUA_Achr6P13420_001 228 ME 229 *8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.8E-20 | 139 | 231 | No hit | No description |
Gene3D | G3DSA:3.40.1160.10 | 3.5E-70 | 275 | 520 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Hamap | MF_01220_B | 33.659 | 285 | 521 | IPR015963 | Uridylate kinase, bacteria |
SuperFamily | SSF53633 | 9.43E-55 | 286 | 520 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Pfam | PF00696 | 1.4E-24 | 288 | 500 | IPR001048 | Aspartate/glutamate/uridylate kinase |
CDD | cd04254 | 8.06E-116 | 288 | 521 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006221 | Biological Process | pyrimidine nucleotide biosynthetic process | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0033862 | Molecular Function | UMP kinase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 527 aa Download sequence Send to blast |
MASCDDDFAL LGDEAQSQHQ PQARAVPFSA AHRYVTAKAT PISLHPRAHH HLGAASSSAP 60 SVIVSPGKKG VVKGAATSAS HHHHLQHIHH QQQPHHHSPK RKDRDDISDG ESPYCYNSSM 120 AANKKSRPMS SSGDYRKDRE EWSDTAIGSL LDAYTERYEQ LNRGNLRGRD WEDVATIVSE 180 RCNKQKVGKS VEQCKNKIDN LKKRYKVECQ RLSIGGLPTS HWPWFKKMEQ IVGSSSSLKA 240 APDDDKSVTL GGPPAVMRQI KRHPIAPSGP LSTNINSKMK SLSNPRWKRV ILKISGMALA 300 GAGPQNVDPK VIMLIAKEIA IASRAGLEVA IVIGGRNFFC GDTWIAATGI DRATTYQIGM 360 MASLMNAMML QASLEKIGVE ARIQSTLLMQ EIAEPYIRRR AIRHLEKGRV VIFGGAGAAT 420 GNPLFSTDTA AALRASEIHA DAVLKGTTMD GVFNCHPRNN GGSAFEHISF RELVSRGFTA 480 MDMTALNFCE ENNIPVVIFN LLEPGNVSKA LCGDQVGTLV DQSGRIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ek5_A | 2e-64 | 281 | 520 | 3 | 239 | Uridylate kinase |
3ek5_B | 2e-64 | 281 | 520 | 3 | 239 | Uridylate kinase |
3ek5_C | 2e-64 | 281 | 520 | 3 | 239 | Uridylate kinase |
3ek5_D | 2e-64 | 281 | 520 | 3 | 239 | Uridylate kinase |
3ek5_E | 2e-64 | 281 | 520 | 3 | 239 | Uridylate kinase |
3ek5_F | 2e-64 | 281 | 520 | 3 | 239 | Uridylate kinase |
3ek6_A | 2e-64 | 281 | 520 | 3 | 239 | Uridylate kinase |
3ek6_B | 2e-64 | 281 | 520 | 3 | 239 | Uridylate kinase |
3ek6_C | 2e-64 | 281 | 520 | 3 | 239 | Uridylate kinase |
3ek6_D | 2e-64 | 281 | 520 | 3 | 239 | Uridylate kinase |
3ek6_E | 2e-64 | 281 | 520 | 3 | 239 | Uridylate kinase |
3ek6_F | 2e-64 | 281 | 520 | 3 | 239 | Uridylate kinase |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00340 | DAP | Transfer from AT3G10030 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009404384.1 | 0.0 | PREDICTED: uncharacterized protein LOC103987725 isoform X1 | ||||
TrEMBL | M0T6P0 | 0.0 | M0T6P0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P13420_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1935 | 34 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10030.1 | 0.0 | Trihelix family protein |