PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P12970_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB_related | ||||||||
Protein Properties | Length: 688aa MW: 73565.5 Da PI: 4.4921 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29 | 2.6e-09 | 201 | 245 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++WT+eEd l+ +v+++G g+W+ I + +Rt+ q+ rw GSMUA_Achr6P12970_001 201 RKPWTKEEDMELIAGVQKFGEGNWANILKGDFkHNRTASQLSQRW 245 789************************984334789999998888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.598 | 196 | 253 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-15 | 197 | 250 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.17E-13 | 198 | 251 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-10 | 200 | 251 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-8 | 201 | 245 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 7.02E-17 | 202 | 250 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 688 aa Download sequence Send to blast |
MTRGAPRKVG ISEEDVSLLL QRYNPTTILT LLQEVSEAAG VRIDWNALVK RTATGITSAR 60 EYQMLWRHLA YHHTLLETIE DGAEPLDDES DLELEIEAVP AVSGEALSEA AACVKVLISC 120 GVPREQGLTS RTAIETPLAV NGFNNQALRV SSDKQQLSQS NYGTDITVPT LQKQPQSTGT 180 SAEGLDGNGM AGPSIAPKKR RKPWTKEEDM ELIAGVQKFG EGNWANILKG DFKHNRTASQ 240 LSQRWAIIRK RDTNLLASSG NKSMSSTRSE ERLATQKAIS LALDMPNSGR LSAILSGGTQ 300 SITPASSSAL SAALSEALPV SSQPLNQLQQ ASTLATSQKI TLNTSNKPRT TPKKSMVPVK 360 PSSGPNSLIQ AAAFAAGGRI ATPSTAASLF KAAQSKNAVH IRPGGGARPS PINNVKTLAV 420 TNSTGPQSTG VRISRPSVMA GPPAANPVSV SSGTRYGCQQ VQGCSGRVGS NPLNTTSTNQ 480 QEIIESNSGE VSHEMTEQKG DIDISSIDVD ELLAEEVKCV DEMELDGTMS HDDQMDLLSL 540 DTNTNEDNDF NNTYDAQASV DEQMDPPDSM VAENIIMENN VVSSDVEAAE SKALEVDDND 600 DQFLLEKGTA SFNGEQNKIS PVGNLNAQDH IVNQEQLISE EVMADNVRES CTNDQQHALP 660 EDTASGSKIP IDDDSISTND KEKTTTER |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 196 | 202 | PKKRRKP |
2 | 197 | 201 | KKRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009404329.1 | 0.0 | PREDICTED: uncharacterized protein LOC103987682 isoform X1 | ||||
TrEMBL | M0T6J5 | 0.0 | M0T6J5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P12970_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4684 | 37 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.1 | 1e-64 | MYB_related family protein |