PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P12970_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 688aa    MW: 73565.5 Da    PI: 4.4921
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P12970_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.6e-09201245144
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                            r++WT+eEd  l+ +v+++G g+W+ I +     +Rt+ q+  rw
  GSMUA_Achr6P12970_001 201 RKPWTKEEDMELIAGVQKFGEGNWANILKGDFkHNRTASQLSQRW 245
                            789************************984334789999998888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.598196253IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-15197250IPR009057Homeodomain-like
SuperFamilySSF466891.17E-13198251IPR009057Homeodomain-like
SMARTSM007172.5E-10200251IPR001005SANT/Myb domain
PfamPF002495.8E-8201245IPR001005SANT/Myb domain
CDDcd116607.02E-17202250No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MTRGAPRKVG ISEEDVSLLL QRYNPTTILT LLQEVSEAAG VRIDWNALVK RTATGITSAR  60
EYQMLWRHLA YHHTLLETIE DGAEPLDDES DLELEIEAVP AVSGEALSEA AACVKVLISC  120
GVPREQGLTS RTAIETPLAV NGFNNQALRV SSDKQQLSQS NYGTDITVPT LQKQPQSTGT  180
SAEGLDGNGM AGPSIAPKKR RKPWTKEEDM ELIAGVQKFG EGNWANILKG DFKHNRTASQ  240
LSQRWAIIRK RDTNLLASSG NKSMSSTRSE ERLATQKAIS LALDMPNSGR LSAILSGGTQ  300
SITPASSSAL SAALSEALPV SSQPLNQLQQ ASTLATSQKI TLNTSNKPRT TPKKSMVPVK  360
PSSGPNSLIQ AAAFAAGGRI ATPSTAASLF KAAQSKNAVH IRPGGGARPS PINNVKTLAV  420
TNSTGPQSTG VRISRPSVMA GPPAANPVSV SSGTRYGCQQ VQGCSGRVGS NPLNTTSTNQ  480
QEIIESNSGE VSHEMTEQKG DIDISSIDVD ELLAEEVKCV DEMELDGTMS HDDQMDLLSL  540
DTNTNEDNDF NNTYDAQASV DEQMDPPDSM VAENIIMENN VVSSDVEAAE SKALEVDDND  600
DQFLLEKGTA SFNGEQNKIS PVGNLNAQDH IVNQEQLISE EVMADNVRES CTNDQQHALP  660
EDTASGSKIP IDDDSISTND KEKTTTER
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196202PKKRRKP
2197201KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009404329.10.0PREDICTED: uncharacterized protein LOC103987682 isoform X1
TrEMBLM0T6J50.0M0T6J5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P12970_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.11e-64MYB_related family protein