PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P12780_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 696aa    MW: 76914.9 Da    PI: 6.6715
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P12780_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.51.1e-22122222198
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k+lt sd++++g +++ +++a+e+       +++++ ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv++++L +gD ++F
  GSMUA_Achr6P12780_001 122 FCKTLTASDTSTHGGFSVLRRHADEClppldmTQDPPC-QELVAKDLHRNEWRFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIF 208
                            99*****************************8555666.59*********************************************** PP

                            EE-SSSEE..EEEEE- CS
                     B3  83 kldgrsefelvvkvfr 98 
                               + +++el+v+v+r
  GSMUA_Achr6P12780_001 209 L--RGENGELRVGVRR 222
                            *..449999*****97 PP
2Auxin_resp108.86e-36248330183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            a+ha++t++ F+v+Y+Pras+seF+++++k+ +a ++k+svGmRfkm+fe++d +err+sGt+vg  d  +++W +S+WrsLk
  GSMUA_Achr6P12780_001 248 ASHAITTGTLFSVFYKPRASRSEFIISLNKYIEAKSHKFSVGMRFKMRFEGDDTPERRFSGTIVGAIDKVSSQWADSEWRSLK 330
                            789*****************************************************************9************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.05E-42112251IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.8E-40118237IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-21121222No hitNo description
SMARTSM010194.5E-22122224IPR003340B3 DNA binding domain
PfamPF023622.1E-20122222IPR003340B3 DNA binding domain
PROSITE profilePS5086310.87122224IPR003340B3 DNA binding domain
PfamPF065074.6E-34248330IPR010525Auxin response factor
PROSITE profilePS5174526.647562655IPR000270PB1 domain
SuperFamilySSF542773.43E-12562639No hitNo description
PfamPF023098.2E-8609653IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MSVANVNISS GTSGDVLYKE LWHACAGPLV TLPRENERVY YFPQGHMEQL EASTNQGLDQ  60
HVPVFNLPSK ILCRVVNVEL RAEPDTDEVY AHIILLPEPN RGEVTSPDPP FSEPERCKVY  120
SFCKTLTASD TSTHGGFSVL RRHADECLPP LDMTQDPPCQ ELVAKDLHRN EWRFRHIFRG  180
QPRRHLLTTG WSVFVSSKRL VAGDAFIFLR GENGELRVGV RRLMRQLNNM PSSVISSHSM  240
HLGVLATASH AITTGTLFSV FYKPRASRSE FIISLNKYIE AKSHKFSVGM RFKMRFEGDD  300
TPERRFSGTI VGAIDKVSSQ WADSEWRSLK VQWDEPSSTL RPDSVSPWEL EPLIAAAPPS  360
AQPVQRIKRA RLPASPVGTP GPSPTPGSWK SQVETTQMFS FSGPQRGEEP YSSYKPACIF  420
SSASQSGSIG FNASNAPSTA INSHAPSTAI NSRLCWPIMT ETQSDTFSAS INREPCDRKQ  480
ETSKGCRLFG IQLIESSGMG EMSPVPTISG VGVDQPAISL EVDSDLQSRP SNIERSDAPA  540
DNSEPEKLCL RSSWETQSRQ PRSCTKVHMQ GMAVGRAVDL TRLCGYDDLL YKLENMFSIE  600
GELSGAVKKW VVVYTDNEDD MMLVGDDPWL EFCSMVRKIY IYTSEEAKRL SPKRKLPPVI  660
GEVVKSGSKK ALFDADADTN AAAGLKGLGG QDDVSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.033531355Auxin response factor 1
4ldw_A0.033531355Auxin response factor 1
4ldw_B0.033531355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009404302.10.0PREDICTED: auxin response factor 7-like isoform X1
RefseqXP_009404304.10.0PREDICTED: auxin response factor 7-like isoform X1
RefseqXP_009404305.10.0PREDICTED: auxin response factor 7-like isoform X1
SwissprotQ6YVY00.0ARFG_ORYSJ; Auxin response factor 7
TrEMBLM0T6H60.0M0T6H6_MUSAM; Auxin response factor
STRINGGSMUA_Achr6P12780_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.20.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]