PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P11910_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 1193aa    MW: 133405 Da    PI: 9.4375
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P11910_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.25.1e-104681340
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                            W++eE e++++a +++G++ W+++a t+  +R+ + +
  GSMUA_Achr6P11910_001 46 QWSKEEIERFYEAYRKYGKD-WRKVAGTLR-NRSSETV 81
                           6*****************99.*********.**98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.12E-104192IPR009057Homeodomain-like
SMARTSM007171.4E-44391IPR001005SANT/Myb domain
PROSITE profilePS500906.44586IPR017877Myb-like domain
PfamPF002491.7E-74683IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-64683IPR009057Homeodomain-like
CDDcd001671.38E-54789No hitNo description
SMARTSM011359.7E-57657758IPR033471DIRP domain
PfamPF065841.3E-33657757IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1193 aa     Download sequence    Send to blast
MASTRKLRNV NKRFAKVFED WSEKDETPPK KSRARKRKLS DMLGSQWSKE EIERFYEAYR  60
KYGKDWRKVA GTLRNRSSET VEALYNMNKA YLSLPEGTAT VAGLIAMMTD HYNILEGSDS  120
DRESNDVAKT YQKPQKRGRG KFRLMPKGSD GCSPDQSQYQ SVSSRYGCLS LLKKKRSGDL  180
FSGNQPRAVG KRTPRIPVSN MYSKYDKEKA TCLNKQSSKS EVNAVDDEGA HVAALALAEV  240
LQRGGSPQIS RTPGSGVDHV RSSPVRSSEQ KSVEQETDRS KLIIQMDDDC HEASLGSREA  300
ENGVFARDVK EGAGAVEAPK RMKKRQGKRP KTFDTENFQI DDDREACSGT EEGSSVRKIK  360
DENDLEVRDN KAARGSNGSR KRSRQLFFGD ENSALDALQT LADLSVNILL PSSAVESESS  420
AQVKEQTNID TDEKPDIPES LPLNYKRDKS KVSGKKERRH SAGVGSDTLS RRSSKVVKGL  480
QRDSKVIAEM NQQACACINM TEKRKGKTFS GKVRDAAISC SNSCSLFLQV SAEEGKRSVA  540
KVRRVSQVSP LLRQGKFVKP PENSSSVADS GRTVTDLSKT TRLAIENQVN LLTKHRSRRK  600
IGLQKAPAWK DFKSNDMGDN CPHKYSYAVN RIVEPKENLS HCLSSKLLRR WCMFEWFYSA  660
IDHPWFAKSE FVEYLNHVRL GHIPRLTRVE WGVIRSSLGK PRRLSKQFLK EEREKLEQYR  720
ESVRTHYAEL QAGLKEGLPT DLARPLSVGQ RVIACHPKTR ELHDGSVLTV ERSRCRVQFD  780
RPELGVKFVM DIDCMPLNPF DNIPETLRPQ NIVINRHCNT FKDMKLEDPP KDWRTGSFDI  840
ADGRTHTSAT SYQMNTLMKQ AKGDTIDAIV QAKATVNQVA VAAQQAMYNQ PCTLSQIQER  900
EADIRALAEL SRALDKKEAL LIELRNMNEE VSEKQKDGDT IKDLDHFRKQ YAMVLVQLRD  960
ANDQVASALL SLRQRNTYHG NSTPPWTRPV ENAGSVGSPE PFNPSAFPNQ DMGSHVREIV  1020
ETSTQKARTM VDAALQAMCT LKEGEDAFTK IGQALDLTNN RNTGSGILGV HGPPNPGHSN  1080
TTNHDHPAST FDITTVHALS PKTNNSSDAD LQLPSELISS CVSTLLMIQT CTERQYPPAE  1140
IAQILDSAVT SLHPYSPHNL PIYREIETCM GIIKNQILAL IPTPTTAAPE ITT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009404210.10.0PREDICTED: protein ALWAYS EARLY 2-like isoform X2
TrEMBLM0T6890.0M0T689_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P11910_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62302331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding