PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P11230_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 721aa    MW: 81483.5 Da    PI: 6.8902
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P11230_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.92e-19531851128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.... 77 
                            lp+G+ F+P+de+l+++ L+k  +g+       +e+ ++++e+    +++P++Lp  ++++  + yfF+k+ k+   + r++++    
  GSMUA_Achr6P11230_001  53 LPRGVNFNPSDEDLLWHLLAKVGKGNAdphpfiHEFITCLDEFeAFGYTHPQKLP-GIRKDGGDSYFFHKSFKTCIAEIRQHQKmcds 139
                            699************8877777666668877743333348888457789******.667777899*********99998888865666 PP

                    NAM  78 ...tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 +  W+++gk+k++++ +g++ g k+++++y       e+++Wvmh+y+l
  GSMUA_Achr6P11230_001 140 dsdSGDVCWQKSGKSKPLIV-DGKHHGYKTMMILY-------ENARWVMHQYHL 185
                            65555778************.9999**********.......3578******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-2545203IPR003441NAC domain
PROSITE profilePS5100517.59853203IPR003441NAC domain
PfamPF023652.9E-1154185IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MDDIDGMPLA KRRRLPISTS PSSSPHGPST PKRSIGFPVE RVSVEVSKKW PGLPRGVNFN  60
PSDEDLLWHL LAKVGKGNAD PHPFIHEFIT CLDEFEAFGY THPQKLPGIR KDGGDSYFFH  120
KSFKTCIAEI RQHQKMCDSD SDSGDVCWQK SGKSKPLIVD GKHHGYKTMM ILYENARWVM  180
HQYHLGVEKI DQEEFVVSKI FYQRTGQVNR SVEDLALGTD ETGKDSMPMA VTGVHPNDDE  240
LDHVLLHVRT HMLLSSMKSG TTDSRCSSDT LCSSEVRMCP EVNLLKTNKF QTDQMICNCS  300
NDANTLDPQL LTLGQSLEDQ NNGNDVLDSV LPSIISEVKV EPLEEICTHN GSGTTAQKPV  360
SSSLEATSRK PTRSCQSGYS AKTKKHTEYS LTDKHSDVIS PKPEMLACGV VSYLKYNNNN  420
MNNSQQFLPQ NKKCEPVNTP NAQVNNFSLR RKRKKTATDS VERALEEDAP GLLQVLLDKG  480
ITIDEIKLYG AAEDDEALEI SSSDDNFEEL ETVITKIFSS QASLFKFSVA RHMKGSKAVY  540
CLSCLISLIE QTRYLQFRNS PVEWGWCRDL QSFIFVFQMH NRIVLERPEY GYATYFFELV  600
DSLPVDWQIK RLVTAMKLTS CSRTTLIENK PLLVGEDLTK GEARVLEEYG WTPNCGLGTM  660
LNYCDRVVHD KKYERFSNEW RAKIGRLLME GHDSGRTILV KLPKRVVKYK GGENFKIKLE  720
N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11014KRRRL
2450454RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009404134.10.0PREDICTED: uncharacterized protein LOC103987531 isoform X2
RefseqXP_018683900.10.0PREDICTED: uncharacterized protein LOC103987531 isoform X1
TrEMBLM0T6210.0M0T621_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P11230_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74793239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.12e-48NAC family protein