PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P10870_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 237aa    MW: 26312.7 Da    PI: 5.2035
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P10870_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-1986135255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  GSMUA_Achr6P10870_001  86 QYRGIRQRP-WGKWAAEIRDPRK---GIRVWLGTFNTAEEAARAYDAEARRIRG 135
                            69*******.**********954...3*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.29E-3186145No hitNo description
SMARTSM003801.3E-3686149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-3286144IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-2286144IPR016177DNA-binding domain
PROSITE profilePS5103224.18486143IPR001471AP2/ERF domain
PRINTSPR003677.3E-128798IPR001471AP2/ERF domain
PfamPF008477.7E-1287135IPR001471AP2/ERF domain
PRINTSPR003677.3E-12109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MCGGAIISDF IPASRRVTAE QLWFDGGETE AGEFDAKRVF LDLTLVSLMF LIIAFQSFAW  60
FAEGSAKSVR FDGSAAKSAK RKRKNQYRGI RQRPWGKWAA EIRDPRKGIR VWLGTFNTAE  120
EAARAYDAEA RRIRGRKAKV NFPTAATASS SAPPEGASLN FYSDEGSNSF AEKNSAIELS  180
EELYPYEPCM KFLPAPYFGR SSDALIDILF GGELVQGGVD VLDLWNFDDL PMEASVY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-20861501479Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009404099.12e-70PREDICTED: ethylene-responsive transcription factor 1
TrEMBLM0T5Y61e-171M0T5Y6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P10870_0011e-172(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-27ethylene-responsive element binding protein