PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P10650_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 469aa    MW: 52353.2 Da    PI: 6.4518
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P10650_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.1e-153175348
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            WT+ Ed+ll + ++++G+ +W++Ia+ ++ g+t  qc+ rw++y+
  GSMUA_Achr6P10650_001 31 TWTPREDDLLREHIALHGTANWRSIAALFN-GKTSRQCRRRWYTYM 75
                           6*****************************.*************97 PP
2Myb_DNA-binding40.56.1e-1381124146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            +g W++eEd ll ++ k +G++ W+ Ia+ +  gRt++ +k+r+ +
  GSMUA_Achr6P10650_001  81 KGGWSAEEDMLLCEVQKIFGNR-WTEIAKVVS-GRTDNAVKNRFST 124
                            688*******************.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.6122479IPR017930Myb domain
SuperFamilySSF466892.43E-2627122IPR009057Homeodomain-like
SMARTSM007176.9E-142877IPR001005SANT/Myb domain
CDDcd001674.91E-143175No hitNo description
Gene3DG3DSA:1.10.10.601.5E-203283IPR009057Homeodomain-like
PfamPF139211.0E-143292No hitNo description
SMARTSM007177.6E-1480128IPR001005SANT/Myb domain
PROSITE profilePS5129416.09580130IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-1784129IPR009057Homeodomain-like
CDDcd001673.37E-1084125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MMRGLEKEND PTSVAPPAVA PPSKKDRHVV TWTPREDDLL REHIALHGTA NWRSIAALFN  60
GKTSRQCRRR WYTYMNSECK KGGWSAEEDM LLCEVQKIFG NRWTEIAKVV SGRTDNAVKN  120
RFSTLCKKRA KLEGFSKENT SSSSDLGTSR VIVQDRYAAA MMGESSVSNK KIRYHISHPK  180
ETVDRNRKLP GEHVSEQNQR RPPLTALVQN INSINGLTND TRGSLCDASN KDIQGTFLRK  240
NDPKLTALLQ QAESLTSLSM KINAEDTNQS SDEAWKELQD YLIQTEDGES LTRRISRMGC  300
MPDDLRNLIE DVNSTKEEGQ QPVRQFDSDE DSQGSSECST GSTHNVNAGE SGSIHHYEDC  360
SLHKDNEVSH LKDDAAHSSM NSSPETILSL SPMPKDEIVN DCTSSEFTSP LQTIPLFQSF  420
ADGIPTPVFT SSERNFLLNV LDFSSMGTKT NSSEQPSCKK ALLHSFKPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-253212910107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009405153.10.0PREDICTED: uncharacterized protein LOC103988334
TrEMBLM0T5W40.0M0T5W4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P10650_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89033847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.21e-111MYB family protein