PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P09760_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 308aa    MW: 35356.5 Da    PI: 6.8879
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P09760_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.6e-171966148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+WT eEd+ll ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  GSMUA_Achr6P09760_001 19 RGPWTVEEDKLLTHYIACHGEGRWNLLARCSGLRRTGKSCRLRWLNYL 66
                           89********************************************97 PP
2Myb_DNA-binding53.94.2e-1772115146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  GSMUA_Achr6P09760_001  72 RGNLTPEEQLLILELHSKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 115
                            7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.7781466IPR017930Myb domain
SuperFamilySSF466892.51E-3018113IPR009057Homeodomain-like
SMARTSM007172.1E-141868IPR001005SANT/Myb domain
PfamPF002497.4E-151966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-222073IPR009057Homeodomain-like
CDDcd001675.14E-112166No hitNo description
PROSITE profilePS5129425.86667121IPR017930Myb domain
SMARTSM007173.3E-1571119IPR001005SANT/Myb domain
PfamPF002495.6E-1672115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-2474120IPR009057Homeodomain-like
CDDcd001672.85E-1276115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MSETRGSHSK HEDMELLNRG PWTVEEDKLL THYIACHGEG RWNLLARCSG LRRTGKSCRL  60
RWLNYLKPDV RRGNLTPEEQ LLILELHSKW GNRWSRIAQH LPGRTDNEIK NYWRTRVQKQ  120
ARQLKVDANS SKFRDAVRCY WMPRLLQKFG SSQTMQYSLE ANTNTTTSDQ VQHRPCQEII  180
NPSMQYCQLG SSSSHEPQAP ENHSAVFPPL PVNMSEFPWR ASDEIHGVAF NIFSSGFSMN  240
NAYDLGTCDL TPVSASAPIY WDLDYGTDNN DCSNYNGDNL WSMDELCDML KSYVSGADIK  300
VPFSDHNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24171215108B-MYB
1h8a_C3e-241712125128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403971.10.0PREDICTED: transcription factor MYB108-like isoform X1
RefseqXP_009403972.10.0PREDICTED: transcription factor MYB108-like isoform X2
SwissprotQ9C9G76e-77MYB62_ARATH; Transcription factor MYB62
TrEMBLM0T5M50.0M0T5M5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P09760_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.13e-79myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]