PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P08090_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ARF | ||||||||
Protein Properties | Length: 824aa MW: 91344.9 Da PI: 6.7413 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.2 | 1.6e-23 | 163 | 264 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++ +++a+e+ +++++ s++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F GSMUA_Achr6P08090_001 163 FCKTLTASDTSTHGGFSVLRRHADEClppldMSQQPPSQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL 250 99*****************************55566678************************************************* PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 + +++el+v+v+r+ GSMUA_Achr6P08090_001 251 --RGDNGELRVGVRRA 264 ..3489999****996 PP | |||||||
2 | Auxin_resp | 116.2 | 2.9e-38 | 289 | 371 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+++F+v+Y+Pr++++eF+v+++++++++k++ s+GmRfkm+fe+e+++e+r++Gt+vg+ d++p+rWp+SkWr+Lk GSMUA_Achr6P08090_001 289 AWHAVNTGTMFTVYYKPRTCPTEFIVPFDQYVDSIKNNHSIGMRFKMRFEGEEAPEQRFTGTIVGIGDSEPSRWPGSKWRCLK 371 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.51E-42 | 156 | 292 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-41 | 156 | 278 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.27E-22 | 162 | 263 | No hit | No description |
Pfam | PF02362 | 2.3E-21 | 163 | 264 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.3E-23 | 163 | 265 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.942 | 163 | 265 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.7E-35 | 289 | 371 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 5.23E-12 | 689 | 766 | No hit | No description |
PROSITE profile | PS51745 | 24.392 | 689 | 771 | IPR000270 | PB1 domain |
Pfam | PF02309 | 4.7E-7 | 737 | 774 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 824 aa Download sequence Send to blast |
MASSEVSVKG SSQGRGDTVS SGCSELHDGA PVRGSDTEGS LGLSGGAVGG KDSVDALYTE 60 LWHACAGPLV TIPRVGERVF YFPQGHMEQV EASTNQVADQ QMPVYNLPWK ILCRVMNVHL 120 KAEPDTDEVF AQITLLPDSK QDENTVEKDT LQPPPPRPHV YSFCKTLTAS DTSTHGGFSV 180 LRRHADECLP PLDMSQQPPS QELVAKDLHG VEWRFRHIFR GQPRRHLLQS GWSVFVSSKR 240 LVAGDAFIFL RGDNGELRVG VRRAMRQQTN VPSSVISSHS MHLGVLATAW HAVNTGTMFT 300 VYYKPRTCPT EFIVPFDQYV DSIKNNHSIG MRFKMRFEGE EAPEQRFTGT IVGIGDSEPS 360 RWPGSKWRCL KVRWDEASSI PRPDRVSPWK IEPAQLPLPP NPIPMPRPKR PRTTAFPSSP 420 DSSVLTKEAS SKVSMDPSQS HGVPRVLQGQ DMATLRSTFS NEADTAQKPI MWLTHDEEKN 480 DVSAQRRLGS ESWMHIKRQE PMYTDMLSGF QPSGDSSGFH SPFLEQASGD KFFLKPHFRD 540 QEAKHNCSPG LWSLMPSNSN LNLGECNLKM TAHVGELSFQ KSSDWLGCSL PDSQTDNMPQ 600 HRVITLQPLV PSQNDVAKYK ANNSGCKLFG FHLNSKPVAS ESAAKHSESC IAAKLVSATL 660 TNGDTEKLIQ VCPQASKDVQ NKMQGGSTRS CTKVHKQGIA LGRSVDLTKF NGYDELIAEL 720 DQMFEFEGAL IAPNKIWLVV YTDNEGDMML VGDDPWNEFC NMVRKIYIYT REEVQRMNPG 780 TLNSRVEESP AVSEERISGK ETKRPVPTAN SENSEGCPGV DAAF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-177 | 44 | 393 | 7 | 354 | Auxin response factor 1 |
4ldw_A | 1e-177 | 44 | 393 | 7 | 354 | Auxin response factor 1 |
4ldw_B | 1e-177 | 44 | 393 | 7 | 354 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00574 | DAP | Transfer from AT5G62000 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009403790.1 | 0.0 | PREDICTED: auxin response factor 24 isoform X1 | ||||
Swissprot | Q2QQX6 | 0.0 | ARFX_ORYSJ; Auxin response factor 24 | ||||
TrEMBL | M0T558 | 0.0 | M0T558_MUSAM; Auxin response factor | ||||
STRING | GSMUA_Achr6P08090_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1178 | 36 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Publications ? help Back to Top | |||
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