PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P08090_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 824aa    MW: 91344.9 Da    PI: 6.7413
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P08090_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.21.6e-23163264199
                            EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                            f+k+lt sd++++g +++ +++a+e+     +++++ s++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F 
  GSMUA_Achr6P08090_001 163 FCKTLTASDTSTHGGFSVLRRHADEClppldMSQQPPSQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL 250
                            99*****************************55566678************************************************* PP

                            E-SSSEE..EEEEE-S CS
                     B3  84 ldgrsefelvvkvfrk 99 
                              + +++el+v+v+r+
  GSMUA_Achr6P08090_001 251 --RGDNGELRVGVRRA 264
                            ..3489999****996 PP

2Auxin_resp116.22.9e-38289371183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            a+ha++t+++F+v+Y+Pr++++eF+v+++++++++k++ s+GmRfkm+fe+e+++e+r++Gt+vg+ d++p+rWp+SkWr+Lk
  GSMUA_Achr6P08090_001 289 AWHAVNTGTMFTVYYKPRTCPTEFIVPFDQYVDSIKNNHSIGMRFKMRFEGEEAPEQRFTGTIVGIGDSEPSRWPGSKWRCLK 371
                            89*******************************************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.51E-42156292IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-41156278IPR015300DNA-binding pseudobarrel domain
CDDcd100179.27E-22162263No hitNo description
PfamPF023622.3E-21163264IPR003340B3 DNA binding domain
SMARTSM010194.3E-23163265IPR003340B3 DNA binding domain
PROSITE profilePS5086311.942163265IPR003340B3 DNA binding domain
PfamPF065071.7E-35289371IPR010525Auxin response factor
SuperFamilySSF542775.23E-12689766No hitNo description
PROSITE profilePS5174524.392689771IPR000270PB1 domain
PfamPF023094.7E-7737774IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009737Biological Processresponse to abscisic acid
GO:0009911Biological Processpositive regulation of flower development
GO:0010047Biological Processfruit dehiscence
GO:0010150Biological Processleaf senescence
GO:0010227Biological Processfloral organ abscission
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 824 aa     Download sequence    Send to blast
MASSEVSVKG SSQGRGDTVS SGCSELHDGA PVRGSDTEGS LGLSGGAVGG KDSVDALYTE  60
LWHACAGPLV TIPRVGERVF YFPQGHMEQV EASTNQVADQ QMPVYNLPWK ILCRVMNVHL  120
KAEPDTDEVF AQITLLPDSK QDENTVEKDT LQPPPPRPHV YSFCKTLTAS DTSTHGGFSV  180
LRRHADECLP PLDMSQQPPS QELVAKDLHG VEWRFRHIFR GQPRRHLLQS GWSVFVSSKR  240
LVAGDAFIFL RGDNGELRVG VRRAMRQQTN VPSSVISSHS MHLGVLATAW HAVNTGTMFT  300
VYYKPRTCPT EFIVPFDQYV DSIKNNHSIG MRFKMRFEGE EAPEQRFTGT IVGIGDSEPS  360
RWPGSKWRCL KVRWDEASSI PRPDRVSPWK IEPAQLPLPP NPIPMPRPKR PRTTAFPSSP  420
DSSVLTKEAS SKVSMDPSQS HGVPRVLQGQ DMATLRSTFS NEADTAQKPI MWLTHDEEKN  480
DVSAQRRLGS ESWMHIKRQE PMYTDMLSGF QPSGDSSGFH SPFLEQASGD KFFLKPHFRD  540
QEAKHNCSPG LWSLMPSNSN LNLGECNLKM TAHVGELSFQ KSSDWLGCSL PDSQTDNMPQ  600
HRVITLQPLV PSQNDVAKYK ANNSGCKLFG FHLNSKPVAS ESAAKHSESC IAAKLVSATL  660
TNGDTEKLIQ VCPQASKDVQ NKMQGGSTRS CTKVHKQGIA LGRSVDLTKF NGYDELIAEL  720
DQMFEFEGAL IAPNKIWLVV YTDNEGDMML VGDDPWNEFC NMVRKIYIYT REEVQRMNPG  780
TLNSRVEESP AVSEERISGK ETKRPVPTAN SENSEGCPGV DAAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-177443937354Auxin response factor 1
4ldw_A1e-177443937354Auxin response factor 1
4ldw_B1e-177443937354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00574DAPTransfer from AT5G62000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403790.10.0PREDICTED: auxin response factor 24 isoform X1
SwissprotQ2QQX60.0ARFX_ORYSJ; Auxin response factor 24
TrEMBLM0T5580.0M0T558_MUSAM; Auxin response factor
STRINGGSMUA_Achr6P08090_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li G, et al.
    Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(28): p. 10377-82
    [PMID:24982173]