PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P07390_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 655aa    MW: 73053.6 Da    PI: 7.0752
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P07390_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.85e-24125225198
                            EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                            f+k+lt sd++++g +++ +++a+e+     +++++ s++l+ +d++g++W +++i+r++++r++lt+GW+ Fv+a++L +gD ++F 
  GSMUA_Achr6P07390_001 125 FCKILTASDTSTHGGFSVLRRHADEClppldMSQNPPSQELVAKDLHGNEWHFRHIFRGHPKRHLLTTGWSVFVSAKQLVAGDAFIFL 212
                            99*****************************555556679************************************************ PP

                            E-SSSEE..EEEEE- CS
                     B3  84 ldgrsefelvvkvfr 98 
                              + +++el+v+v+r
  GSMUA_Achr6P07390_001 213 --RGENGELRVGVRR 225
                            ..449999*****97 PP
2Auxin_resp103.13.4e-34251333183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aaha+st++ F+v+Y+Pr+ +seFv++v+k+++  ++k+s+GmRfkm+fe+++++e+r+sGt++g+ d++++ W +S+WrsLk
  GSMUA_Achr6P07390_001 251 AAHAFSTGTRFSVFYKPRTNRSEFVISVNKYLEGKNKKISMGMRFKMRFEGDEAPEKRFSGTIIGMGDTKTSIWADSEWRSLK 333
                            79*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.18E-42115254IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-41122240IPR015300DNA-binding pseudobarrel domain
CDDcd100172.71E-22123225No hitNo description
SMARTSM010195.1E-22125227IPR003340B3 DNA binding domain
PROSITE profilePS5086311.97125227IPR003340B3 DNA binding domain
PfamPF023628.2E-22125225IPR003340B3 DNA binding domain
PfamPF065072.5E-32251333IPR010525Auxin response factor
PfamPF023092.4E-14530626IPR033389AUX/IAA domain
SuperFamilySSF542776.87E-12533614No hitNo description
PROSITE profilePS5174527.72535617IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MAMGPPNCSV GVGSSGNGLS KELWHACAGP LVTVPCQGER VYYFPQGHME QLEAPSDQEN  60
EQKMPLFNLP SKILCKVIHV DLHAEPDTDE VYAQITLLPE INQQGEVTTP DPPLPEAERC  120
TVHSFCKILT ASDTSTHGGF SVLRRHADEC LPPLDMSQNP PSQELVAKDL HGNEWHFRHI  180
FRGHPKRHLL TTGWSVFVSA KQLVAGDAFI FLRGENGELR VGVRRLMKQQ NNMPSSVISS  240
HSMHVGVLAT AAHAFSTGTR FSVFYKPRTN RSEFVISVNK YLEGKNKKIS MGMRFKMRFE  300
GDEAPEKRFS GTIIGMGDTK TSIWADSEWR SLKVRWDEHS SIMRPDKVSP WELVPLVAAT  360
HLTSQPVQRS KRARPPGSPE LWKSPEETTQ NYSVSETQSS SFSAASKFDT IGFSAKTGTS  420
TVTNSPIYRP IRTSAQTKSF LTSINEGPNE TKKEATMGCR LFGIQLIESA ATEEISPVVT  480
ISSIAEDQPL TSLIVDSDRQ SQPSNVNRSD NPAISSEVDK SCLKSPQETY SRQTRSCTKV  540
HMQGFAVGRA VDLTRLNGYD ELLHKLEEMF SIERELTGAV NKWVIVYTDD EDDIMLVGDD  600
PWNEFCSIVR KIHIYTCEEA KRLSPKIKLP VIRGDINFRV KKASSGADDY KNHPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.01335613355Auxin response factor 1
4ldw_A0.01335613355Auxin response factor 1
4ldw_B0.01335613355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403719.10.0PREDICTED: auxin response factor 7-like isoform X1
SwissprotQ6YVY00.0ARFG_ORYSJ; Auxin response factor 7
TrEMBLM0T4Y80.0M0T4Y8_MUSAM; Auxin response factor
STRINGGSMUA_Achr6P07390_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]