PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P07150_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 455aa    MW: 51343.4 Da    PI: 4.7789
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P07150_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.21.5e-25297186
               trihelix  1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80
                           +Wt+ +v++Li+a+++++e++ +++         ++k++W+++sk+m++rg+ +sp+qC++k+++lnkryk+++++ +++ +++++++ +
  GSMUA_Achr6P07150_001  2 KWTDAMVRLLITAVSYTGEDVASECggrrkhvilQRKGKWKAISKVMAQRGCYVSPQQCEDKFNDLNKRYKRLTDILGRGtSCKVVENPS 91
                           7*********************988888999999**********************************************669******* PP

               trihelix 81 yfdqle 86
                           ++d+++
  GSMUA_Achr6P07150_001 92 LLDHMN 97
                           ***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-212123No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MKWTDAMVRL LITAVSYTGE DVASECGGRR KHVILQRKGK WKAISKVMAQ RGCYVSPQQC  60
EDKFNDLNKR YKRLTDILGR GTSCKVVENP SLLDHMNNLS EKSKDDVRKI LSSKHLFYEE  120
MCSYHNCNRL NLPADPALQR SLQQALRSRD EHDTRRSLHE DIDEGDQGAD SDDEEGDVLE  180
RLTVDMNQVF SEGSQSTLMH HRCNSYPLQL EEKRLYIQAQ MLELERQHYK WQRFSKKKDR  240
ELNRMRLENE RMKLENEHLS LEIRQKELEL DVILKRQQSM GACATKPMAQ GDAPPPMEPD  300
PQVEDGGGGQ EVEQGPGPAP DDNRRRSLGE LFKNEEVIRS SETDKNVVSE TVTPEPMEVK  360
EEVIDNKAID EAVLHEADKQ PTEVPKAEAE AAEAISNSTP QETSVLPPAS DSEVITADVE  420
PLGSEVKAQL DTGKVEAVES SPTEGGPAAL EKKDV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403682.10.0PREDICTED: uncharacterized protein LOC103987182
RefseqXP_018683165.10.0PREDICTED: uncharacterized protein LOC103987182
TrEMBLM0T4W40.0M0T4W4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P07150_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.19e-86