PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P06490_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 289aa MW: 33221.1 Da PI: 11.1034 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.3 | 5.6e-11 | 89 | 122 | 14 | 48 |
HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++v+q+G + W+ Ia+++ gR +kqc++rw+++l GSMUA_Achr6P06490_001 89 NLVEQHGLRKWSHIAQMLH-GRIGKQCRERWHNHL 122 58*****************.*************97 PP | |||||||
2 | Myb_DNA-binding | 58.8 | 1.2e-18 | 128 | 170 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W+ eEd++l++a+++ G++ W+ Ia++++ gRt++++k++w+ GSMUA_Achr6P06490_001 128 KDTWSDEEDKILIQAHTEVGNK-WAEIAKRLP-GRTENSIKNHWN 170 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.47 | 69 | 122 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-4 | 73 | 124 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-21 | 89 | 129 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.86E-8 | 89 | 122 | No hit | No description |
Pfam | PF00249 | 2.6E-9 | 90 | 122 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.14E-28 | 102 | 178 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.059 | 123 | 177 | IPR017930 | Myb domain |
SMART | SM00717 | 3.0E-17 | 127 | 175 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-16 | 128 | 170 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-22 | 130 | 175 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.48E-13 | 130 | 173 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MVILSTSLNL EKGDVKVVIL SNKTIKERER ERERKEATPM SCPVWSTTSR PRWRSRRTRR 60 PCLREEVGVK DRRRPAWSKA NGLLKKTGNL VEQHGLRKWS HIAQMLHGRI GKQCRERWHN 120 HLRPNIKKDT WSDEEDKILI QAHTEVGNKW AEIAKRLPGR TENSIKNHWN ATKRRQFARR 180 RCRNRKNPKS GMLLQNYIKS LALSSAPSTR RRKASSGNSK AATAGAVEEL SAAADASPNS 240 DDNLVPACDF SDIICVDLKL ESGTRLYLSP YCRGTLRQKL DNCKVKTYF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 5e-37 | 90 | 177 | 18 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-37 | 90 | 177 | 18 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 4e-37 | 90 | 177 | 18 | 105 | C-Myb DNA-Binding Domain |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009405087.1 | 1e-115 | PREDICTED: transcription factor MYB98-like | ||||
Swissprot | Q9S7L2 | 1e-60 | MYB98_ARATH; Transcription factor MYB98 | ||||
TrEMBL | M0T4P7 | 0.0 | M0T4P7_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P06490_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2806 | 37 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 7e-54 | myb domain protein 98 |
Publications ? help Back to Top | |||
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