PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P06130_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family CO-like
Protein Properties Length: 445aa    MW: 49155.6 Da    PI: 6.2417
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P06130_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.62e-061661442
               zf-B_box  4 rkCpeHee.kelqlfCedCqqllCedClleeHkg......Htvvpl 42
                             C++++e   + l+C+ +   lC  C    H        Ht+ p+
  GSMUA_Achr6P06130_001 16 LPCDHCGEaATAVLYCRADAARLCLACDADVHAAnalsqrHTRAPI 61
                           67*****9555*********************66788888988775 PP
2zf-B_box22.22.9e-075899238
               zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.....Ht 38
                           ++++C+ +   ++   C  ++  lC+ C + +H       H 
  GSMUA_Achr6P06130_001 58 RAPICDSCAAAPAVALCAADGLALCAACDDDTHAAfgpssHP 99
                           5799*****************************656666676 PP
3CCT64.82.6e-22400443144
                    CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                            R +a+lRYkeKrk+R+++K+irYesRK +A+sR+RvKGrFvk++
  GSMUA_Achr6P06130_001 400 RGNAVLRYKEKRKNRRYDKHIRYESRKLRADSRKRVKGRFVKST 443
                            7789**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.0541361IPR000315B-box-type zinc finger
SMARTSM003361.2E-111361IPR000315B-box-type zinc finger
CDDcd000211.60E-81761No hitNo description
PROSITE profilePS501199.17257103IPR000315B-box-type zinc finger
SMARTSM003360.1962103IPR000315B-box-type zinc finger
PfamPF062031.3E-16400442IPR010402CCT domain
PROSITE profilePS5101715.071400442IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MGVEDVEGGG RRKEGLPCDH CGEAATAVLY CRADAARLCL ACDADVHAAN ALSQRHTRAP  60
ICDSCAAAPA VALCAADGLA LCAACDDDTH AAFGPSSHPR TAIESFSGSL PAIELAAAWG  120
FDLASKIHQS CLPAEFTSVD DWFALDATPA VDPSFQELYV PCAKRHKSSS ATGGKGRQAL  180
LRQLMELVAR ESEGSCKWRQ TTPIKKNDHR EDEEEEEEKG RGTEQMGYTS LLMMEPSARA  240
ALKESDRIME EENLVWDHDH IDHAAQVWDF DSGRTRNRSE YSSLEVGFGT NSNGFMIKSY  300
SELLTESSLG ATNVLEDIYD TSCLSSNERK KVDVTSRWHK NTRNAASQGS STFHGKRLDM  360
ARPVDPSHDS ETAGETKEIF GEPPINLKND TDSNFLSQNR GNAVLRYKEK RKNRRYDKHI  420
RYESRKLRAD SRKRVKGRFV KSTEA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403562.20.0PREDICTED: zinc finger protein CONSTANS-LIKE 14 isoform X2
TrEMBLM0T4L10.0M0T4L1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P06130_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45042026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.14e-34B-box type zinc finger protein with CCT domain