PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P05880_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 476aa MW: 51151.1 Da PI: 6.5763 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.2 | 1.1e-30 | 228 | 286 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+a+d +++++tYeg+Hnh+ GSMUA_Achr6P05880_001 228 ADGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCADDRSILTTTYEGTHNHP 286 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.5E-33 | 212 | 288 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.32E-28 | 220 | 288 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.988 | 222 | 288 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.2E-37 | 227 | 287 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-27 | 229 | 286 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 476 aa Download sequence Send to blast |
MEVNEVDFFS AERRKAVGRV EADLGPKVPS SCIKKEDLTI AGLNLLIANA RSDLSTVDDA 60 VLPADDRKES KSELAAMRDE LARVKEENQK LREMLNQAIS NYNALQMHLT ALRQQHDVVD 120 GRVEAKNDEH GEVLVPRQFM DLGPAGDADE PSHSSTATRD RPSPPPDNGG VRSMDSERRK 180 RSTDKEIVPP PDHPNSNREA SSTEQAHEAI MRKARVSVRA RSDAPMIADG CQWRKYGQKM 240 AKGNPCPRAY YRCTMAAGCP VRKQVQRCAD DRSILTTTYE GTHNHPLPPA AMAMASTTSA 300 AVSMLLSGSM SSPEGLMNPS FMARTVLPFS SSMATISASA PFPTFPFPAA AAAAGYFPVP 360 NASGQTHINQ SRFSGLQLSA AMEASEFPHP KEHAALPPSL ADTVTAATAA ITADPNFTAA 420 LAAAISSIIN GNHPATASDN HDNRSTASRT INEDDNNATT SSKDINQSNT NFTATK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-21 | 214 | 290 | 1 | 76 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009403538.1 | 0.0 | PREDICTED: probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-118 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | M0T4I6 | 0.0 | M0T4I6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P05880_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5265 | 36 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-89 | WRKY family protein |