PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P05480_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 423aa    MW: 47841.5 Da    PI: 8.0414
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P05480_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.61e-35461881128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra. 77 
                            lp+G++F+Ptd+el+ e+L++kv++++      +++  +i+++d    i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+ 
  GSMUA_Achr6P05480_001  46 LPAGVKFDPTDQELI-EHLEAKVKEEDlrshplIDE--FIPTIDgedgICYTHPERLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKi 129
                            799************.99********9666543222..3444433445**********.555666799******************85 PP

                    NAM  78 .......tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                     + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  GSMUA_Achr6P05480_001 130 qsecdlqKGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 188
                            666665544788************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.12E-3740207IPR003441NAC domain
PROSITE profilePS5100532.48846207IPR003441NAC domain
PfamPF023651.6E-1647188IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MNTSPKGSVS GSSLIDAKLE EHRVCGSKQC PGCGHKFDQR PDWVGLPAGV KFDPTDQELI  60
EHLEAKVKEE DLRSHPLIDE FIPTIDGEDG ICYTHPERLP GVTRDGLSKH FFHRPSKAYT  120
TGTRKRRKIQ SECDLQKGET RWHKTGKTRP VMVNGKQKGC KKILVLYTNF GKHRKPEKTN  180
WVMHQYHLGE LEEEKEGELV VSKIFYQTQP RQCNLSERST AVAAAMEGID QRRDSGSGSC  240
SSKEAGVSGY SGMEMHQHMK PDNFSFAPFR ESFNEVIPTG FYEHAEHERR ARPPPHYLAQ  300
EKQQQQRRQQ RQGAPATAFH ITRPMNPIST VISAPPLHHA SVVLGDPFHV SRILFQADKS  360
QQQQQQQAQR QQQKLEGGSA SGLEELVLSC TSAGHRGETP IPHSQETEWQ YSYWSSDNPD  420
HHG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403493.10.0PREDICTED: NAC domain-containing protein 73 isoform X2
SwissprotQ9M0F81e-133NAC75_ARATH; NAC domain-containing protein 75
TrEMBLM0T4E60.0M0T4E6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P05480_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-126NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]